haplotyper: Tool for Clustering Genotypes in Haplotypes

Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.

Version:	0.1
Depends:	R (≥ 2.10)
Imports:	graphics, utils
Suggests:	knitr, rmarkdown, testthat
Published:	2016-04-06
DOI:	10.32614/CRAN.package.haplotyper
Author:	Sebastian Simondi and Gaston Quero, with contributions from Victoria Bonnecarrere and Lucia Gutierrez
Maintainer:	Gaston Quero <gastonquero at gmail.com>
License:	GPL-3
NeedsCompilation:	no
CRAN checks:	haplotyper results

Documentation:

Reference manual:	haplotyper.html , haplotyper.pdf
Vignettes:	Use haplotyper (source, R code)

Downloads:

Package source:	haplotyper_0.1.tar.gz
Windows binaries:	r-devel: haplotyper_0.1.zip, r-release: haplotyper_0.1.zip, r-oldrel: haplotyper_0.1.zip
macOS binaries:	r-release (arm64): haplotyper_0.1.tgz, r-oldrel (arm64): haplotyper_0.1.tgz, r-release (x86_64): haplotyper_0.1.tgz, r-oldrel (x86_64): haplotyper_0.1.tgz

Linking:

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