Last updated on 2025-07-07 22:50:12 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.500, system: 0.043, elapsed: 1.835 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.102, system: 0.137, elapsed: 12.205 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.014, elapsed: 0.254 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.538, system: 0.178, elapsed: 3.920 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.002, elapsed: 0.205 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.024, system: 0.396, elapsed: 19.118 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.452, system: 0.035, elapsed: 2.018 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.031, system: 0.075, elapsed: 12.458 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.012, elapsed: 0.255 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.767, system: 0.177, elapsed: 5.439 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.275 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.130, system: 0.321, elapsed: 21.152 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.553, system: 0.034, elapsed: 2.090 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.027, system: 0.067, elapsed: 12.592 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.294 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.719, system: 0.184, elapsed: 5.747 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.240 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.168, system: 0.225, elapsed: 1.089 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.438, system: 0.548, elapsed: 22.968 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.500, system: 0.031, elapsed: 2.131 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.956, system: 0.078, elapsed: 12.971 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.016, elapsed: 0.325 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.829, system: 0.230, elapsed: 6.204 seconds]
Computing values for grid cells...
... done. [user: 0.161, system: 0.006, elapsed: 0.215 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.289, system: 0.567, elapsed: 20.525 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.577, system: 0.959, elapsed: 43.415 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/132s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.521, system: 0.047, elapsed: 2.203 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.045, system: 0.101, elapsed: 11.868 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.015, elapsed: 0.264 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.562, system: 0.196, elapsed: 4.328 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.005, elapsed: 0.248 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.002, system: 0.386, elapsed: 19.679 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.512, system: 0.035, elapsed: 1.958 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.972, system: 0.094, elapsed: 16.597 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.180, system: 0.014, elapsed: 0.418 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.677, system: 0.170, elapsed: 9.262 seconds]
Computing values for grid cells...
... done. [user: 0.163, system: 0.004, elapsed: 0.375 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.017, system: 0.336, elapsed: 29.564 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.597, system: 0.036, elapsed: 3.318 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.986, system: 0.069, elapsed: 11.031 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.176, system: 0.009, elapsed: 0.195 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.467, system: 0.199, elapsed: 4.528 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.006, elapsed: 0.355 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.070, system: 0.252, elapsed: 1.168 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.072, system: 0.598, elapsed: 21.703 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.573, system: 0.057, elapsed: 2.150 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.064, system: 0.186, elapsed: 11.998 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.013, elapsed: 0.321 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.629, system: 0.173, elapsed: 9.303 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.004, elapsed: 0.412 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.114, system: 0.455, elapsed: 27.219 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.353, system: 0.921, elapsed: 52.588 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64