treedata.table: Manipulation of Matched Phylogenies and Data using 'data.table'

An implementation that combines trait data and a phylogenetic tree (or trees) into a single object of class 'treedata.table'. The resulting object can be easily manipulated to simultaneously change the trait- and tree-level sampling. Currently implemented functions allow users to use a 'data.table' syntax when performing operations on the trait dataset within the 'treedata.table' object. For more details see Roman-Palacios et al. (2021) <doi:10.7717/peerj.12450>.

Version: 0.1.1
Depends: R (≥ 2.10), ape
Imports: lazyeval, geiger, utils, data.table
Suggests: covr, knitr, rmarkdown, testthat, utf8
Published: 2025-10-09
DOI: 10.32614/CRAN.package.treedata.table
Author: Josef Uyeda ORCID iD [aut], Cristian Roman-Palacios ORCID iD [aut, cre], April Wright ORCID iD [aut], Luke Harmon [ctb], Hugo Gruson [rev], Kari Norman [rev]
Maintainer: Cristian Roman-Palacios <cromanpa at arizona.edu>
BugReports: https://github.com/ropensci/treedata.table/issues
License: MIT + file LICENSE
URL: https://ropensci.github.io/treedata.table/, https://docs.ropensci.org/treedata.table/, https://github.com/ropensci/treedata.table/
NeedsCompilation: no
CRAN checks: treedata.table results

Documentation:

Reference manual: treedata.table.html , treedata.table.pdf
Vignettes: Getting Started With The treedata.table Package (source, R code)
Breve Introducción al Paquete treedata.table (source, R code)
Working With multiPhylo Objects in treedata.table (source, R code)
Partially Matching of Trait Data and Tree(s) in treedata.table (source, R code)
Additional Functions for Manipulating Data in treedata.table (source, R code)

Downloads:

Package source: treedata.table_0.1.1.tar.gz
Windows binaries: r-devel: treedata.table_0.1.1.zip, r-release: treedata.table_0.1.1.zip, r-oldrel: treedata.table_0.1.1.zip
macOS binaries: r-release (arm64): treedata.table_0.1.1.tgz, r-oldrel (arm64): treedata.table_0.1.1.tgz, r-release (x86_64): treedata.table_0.1.1.tgz, r-oldrel (x86_64): treedata.table_0.1.1.tgz
Old sources: treedata.table archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=treedata.table to link to this page.