A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution, see Staab et al. (2015) <doi:10.1093/bioinformatics/btu861>. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.
| Version: | 1.7.5 |
| Depends: | R (≥ 3.1.0) |
| Imports: | Rcpp (≥ 0.11.2) |
| LinkingTo: | Rcpp |
| Suggests: | ape, knitr, rmarkdown, testthat (≥ 0.9.0) |
| Published: | 2024-01-08 |
| DOI: | 10.32614/CRAN.package.scrm |
| Author: | Paul Staab [aut, cph], Zhu Sha [aut, cph], Dirk Metzler [aut, cre, cph, ths], Gerton Lunter [aut, cph, ths] |
| Maintainer: | Dirk Metzler <metzler at bio.lmu.de> |
| BugReports: | https://github.com/scrm/scrm-r/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/scrm/scrm-r |
| NeedsCompilation: | yes |
| Citation: | scrm citation info |
| Materials: | README, NEWS |
| CRAN checks: | scrm results |
| Reference manual: | scrm.html , scrm.pdf |
| Vignettes: |
scrm-Arguments (source) scrm-TreesForApe (source, R code) |
| Package source: | scrm_1.7.5.tar.gz |
| Windows binaries: | r-devel: scrm_1.7.5.zip, r-release: scrm_1.7.5.zip, r-oldrel: scrm_1.7.5.zip |
| macOS binaries: | r-release (arm64): scrm_1.7.5.tgz, r-oldrel (arm64): scrm_1.7.5.tgz, r-release (x86_64): scrm_1.7.5.tgz, r-oldrel (x86_64): scrm_1.7.5.tgz |
| Old sources: | scrm archive |
| Reverse imports: | coala, poolABC, poolHelper |
| Reverse suggests: | jackalope |
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