bayestransmission 0.1.0

CRAN Resubmission Changes

• Changed \dontrun{} to \donttest{} in documentation examples per CRAN feedback
• Implemented conditional compilation to reduce package size by 6% (36.3 MB → 34 MB)
• Moved development C++ code out of installed package

New Features

• Conditional Compilation System: Three-tier build configuration
  • Default build exposes 8 critical C++ classes (34 MB)
  • Comprehensive testing build adds 8 testing classes (38 MB)
    
  • Full build adds 7 additional diagnostic classes (42 MB)
  • Added getExposureFlags() to query build configuration at runtime
• Enhanced Testing: Comprehensive test suite with conditional skipping
  • Test helpers: skip_if_not_exposed() and skip_if_method_not_available()
  • 304 tests pass, 38 appropriately skip in minimal build
  • Full coverage of MCMC, likelihood computation, and model creation

Bug Fixes

• Fixed potential segfaults in SystemHistory container access methods
• Improved memory management with shared_ptr caching for Map/IntMap objects

Internal Changes

• Reorganized C++ class exposure into logical tiers
• Added stub functions for conditionally compiled exports with informative errors
• Reduced Rcpp template instantiation by ~65%
• Cleaned up package structure (moved original_cpp out of inst/)

bayestransmission 0.0.0.9000

• Initial CRAN submission.
• Added Bayesian inference methods for infectious disease transmission models.
• Implemented MCMC algorithms for estimating transmission parameters.
• Added support for multiple model types including LogNormal and LinearAbx models.