Generate knockoffs for genetic data and hidden Markov models. For more information, see the website below and the accompanying papers: "Gene hunting with hidden Markov model knockoffs", Sesia et al., Biometrika, 2019, (<doi:10.1093/biomet/asy033>). "Multi-resolution localization of causal variants across the genome", Sesia et al., bioRxiv, 2019, (<doi:10.1101/631390>).
| Version: | 0.8.2 |
| Depends: | R (≥ 3.3.0) |
| Imports: | Rcpp (≥ 0.12.13), Rdpack |
| LinkingTo: | Rcpp, RcppArmadillo, RcppProgress |
| Suggests: | knitr, testthat, parallel, doParallel |
| Published: | 2019-05-17 |
| DOI: | 10.32614/CRAN.package.SNPknock |
| Author: | Matteo Sesia [aut, cre] |
| Maintainer: | Matteo Sesia <msesia at stanford.edu> |
| BugReports: | https://github.com/msesia/snpknock/issues |
| License: | GPL-3 |
| URL: | https://msesia.github.io/snpknock |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | SNPknock citation info |
| Materials: | README, NEWS |
| CRAN checks: | SNPknock results [issues need fixing before 2025-11-15] |
| Reference manual: | SNPknock.html , SNPknock.pdf |
| Vignettes: |
Using SNPknock in R (source, R code) Using SNPknock with Genetic Data (source, R code) |
| Package source: | SNPknock_0.8.2.tar.gz |
| Windows binaries: | r-devel: SNPknock_0.8.2.zip, r-release: SNPknock_0.8.2.zip, r-oldrel: SNPknock_0.8.2.zip |
| macOS binaries: | r-release (arm64): SNPknock_0.8.2.tgz, r-oldrel (arm64): SNPknock_0.8.2.tgz, r-release (x86_64): SNPknock_0.8.2.tgz, r-oldrel (x86_64): SNPknock_0.8.2.tgz |
| Old sources: | SNPknock archive |
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