Cluster user-supplied somatic read counts with corresponding allele-specific copy number and tumor purity to infer feasible underlying intra-tumor heterogeneity in terms of number of subclones, multiplicity, and allocation (Little et al. (2019) <doi:10.1186/s13073-019-0643-9>).
| Version: | 1.0.0 |
| Depends: | R (≥ 2.10) |
| Imports: | Rcpp, stats, smarter, reshape2, ggplot2 |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, devtools |
| Published: | 2025-02-27 |
| DOI: | 10.32614/CRAN.package.SMASH |
| Author: | Paul Little [aut, cre] |
| Maintainer: | Paul Little <pllittle321 at gmail.com> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| Citation: | SMASH citation info |
| CRAN checks: | SMASH results |
| Reference manual: | SMASH.html , SMASH.pdf |
| Vignettes: |
test (source, R code) |
| Package source: | SMASH_1.0.0.tar.gz |
| Windows binaries: | r-devel: SMASH_1.0.0.zip, r-release: SMASH_1.0.0.zip, r-oldrel: SMASH_1.0.0.zip |
| macOS binaries: | r-release (arm64): SMASH_1.0.0.tgz, r-oldrel (arm64): SMASH_1.0.0.tgz, r-release (x86_64): SMASH_1.0.0.tgz, r-oldrel (x86_64): SMASH_1.0.0.tgz |
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