PopPsiSeqR: Process and Visualize Evolve & Resequence Experiments
Handle data from evolve and resequence experiments.
Measured allele frequencies (e.g., from variants called from high-throughput
sequencing data) are compared using an update of the PsiSeq algorithm
(Earley, Eric and Corbin Jones (2011) <doi:10.1534/genetics.111.129445>).
Functions for saving and loading important files are also included, as well
as functions for basic data visualization.
| Version: |
1.0.0 |
| Imports: |
rtracklayer, GenomicRanges, ggplot2, dplyr, S4Vectors, magrittr, ggbio, withr, utils, patchwork, tidyr, rlang, devtools |
| Suggests: |
knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: |
2025-08-20 |
| DOI: |
10.32614/CRAN.package.PopPsiSeqR |
| Author: |
Charles Soeder [aut, cre, cph] |
| Maintainer: |
Charles Soeder <csoeder at email.unc.edu> |
| BugReports: |
https://github.com/csoeder/PopPsiSeqR/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/csoeder/PopPsiSeq,
https://github.com/csoeder/PopPsiSeqR |
| NeedsCompilation: |
no |
| Materials: |
README, NEWS |
| CRAN checks: |
PopPsiSeqR results |
Documentation:
Downloads:
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