Last updated on 2026-04-23 22:53:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 2.11 | 58.27 | 60.38 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 6.00 | 127.01 | 133.01 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 6.00 | 164.67 | 170.67 | OK | |
| r-devel-macos-arm64 | 0.0.1 | 1.00 | 35.00 | 36.00 | OK | |
| r-devel-windows-x86_64 | 0.0.1 | 5.00 | 119.00 | 124.00 | OK | |
| r-release-macos-arm64 | 0.0.1 | 1.00 | 33.00 | 34.00 | OK | |
| r-release-macos-x86_64 | 0.0.1 | 3.00 | 180.00 | 183.00 | OK | |
| r-release-windows-x86_64 | 0.0.1 | 7.00 | 90.00 | 97.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.0.1 | 3.00 | 211.00 | 214.00 | OK | |
| r-oldrel-windows-x86_64 | 0.0.1 | 8.00 | 121.00 | 129.00 | OK |
Version: 0.0.1
Check: tests
Result: ERROR
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(OdysseusCharacterizationModule)
>
> test_check("OdysseusCharacterizationModule")
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-6.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-17.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-26.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-47.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-96.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-114.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-122.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-129.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-137.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-145.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-152.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-173.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-183.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-207.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-216.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-247.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-283.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-318.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-SqlBuildingBlock-351.R
attempting to download GiBleed
trying URL 'https://raw.githubusercontent.com/OHDSI/EunomiaDatasets/main/datasets/GiBleed/GiBleed_5.3.zip'
Content type 'application/zip' length 6861852 bytes (6.5 MB)
==================================================
downloaded 6.5 MB
attempting to extract and load: D:\temp\2026_04_23_19_18_24_32241\RtmpsXXhdj/GiBleed_5.3.zip to: D:\temp\2026_04_23_19_18_24_32241\RtmpsXXhdj/GiBleed_5.3.sqlite
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-covariateData-133.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-covariateData-174.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-covariateData-280.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-130.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-150.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-163.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-173.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-187.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-198.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-215.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-228.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-239.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-247.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-266.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-285.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-299.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-422.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-432.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-handleConceptSets-443.R
Characterization Analysis Plan
========================================
Analysis Windows: 1
Base Feature Domains: 1 of 9 enabled
condition_occurrence
Cohort Features: disabled
Concept Set Features: disabled
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-80.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-121.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-146.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-179.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-206.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-229.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-243.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-275.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-310.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-346.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-384.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-422.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-455.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-468.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-480.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-492.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-502.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-singleNodeSetting-528.R
java.home option:
JAVA_HOME environment variable: C:/Program Files/jdk-11.0.18.10-hotspot
Saving _problems/test-utilits-80.R
[ FAIL 57 | WARN 60 | SKIP 3 | PASS 328 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• {DatabaseConnector} cannot be loaded (1):
'test-executeSpec-integration.R:7:1'
• {SqlRender} cannot be loaded (2): 'test-SqlBuildingBlock.R:158:3',
'test-SqlBuildingBlock.R:195:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-SqlBuildingBlock.R:6:3'): .returnSqlBlock returns non-empty SQL with aggregation ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = TRUE) at test-SqlBuildingBlock.R:6:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:17:3'): .returnSqlBlock returns raw-only SQL without aggregation ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = FALSE) at test-SqlBuildingBlock.R:17:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:26:3'): .returnSqlBlock SQL contains expected placeholders ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = TRUE) at test-SqlBuildingBlock.R:26:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:47:3'): .returnSqlBlock raw SQL contains conditional blocks ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = FALSE) at test-SqlBuildingBlock.R:47:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:96:3'): renderSpecSql produces rendered SQL without unresolved @params ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec() at test-SqlBuildingBlock.R:96:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:114:3'): renderSpecSql embeds correct schema and table ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec() at test-SqlBuildingBlock.R:114:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:122:3'): renderSpecSql embeds correct concept_id_col ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec() at test-SqlBuildingBlock.R:122:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:129:3'): renderSpecSql embeds analysis_id ───
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec() at test-SqlBuildingBlock.R:129:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:137:3'): renderSpecSql non-overlap uses start-date logic ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec() at test-SqlBuildingBlock.R:137:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:145:3'): renderSpecSql with aggregated=TRUE includes aggregation block ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec(aggregated = TRUE) at test-SqlBuildingBlock.R:145:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:152:3'): renderSpecSql with aggregated=FALSE excludes aggregation ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec(aggregated = FALSE) at test-SqlBuildingBlock.R:152:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:173:3'): renderAllSpecSql renders all specs ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec() at test-SqlBuildingBlock.R:173:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:183:3'): renderAllSpecSql names match analysis IDs ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec() at test-SqlBuildingBlock.R:183:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:207:3'): singleNodeSpec has tableDatabaseSchema and personIdCol ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec() at test-SqlBuildingBlock.R:207:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:216:3'): singleNodeSpec sql field is non-empty string ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule (local) make_test_spec() at test-SqlBuildingBlock.R:216:3
2. │ └─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:79:3
3. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
4. └─base::loadNamespace(x)
5. ├─base::namespaceImport(...)
6. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
7. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:243:3'): cohort source spec uses subject_id for personIdCol ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:243:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:279:3'): concept set source spec uses person_id for personIdCol ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:279:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:314:3'): renderSpecSql overlap mode uses date_end_col ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:314:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-SqlBuildingBlock.R:347:3'): renderSpecSql ATC spec includes ATC join ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-SqlBuildingBlock.R:347:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-covariateData.R:133:3'): .assembleCovariateData produces empty CovariateData when no results ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─Eunomia::getEunomiaConnectionDetails() at test-covariateData.R:133:3
2. │ └─Eunomia::getDatabaseFile(...)
3. │ └─Eunomia::extractLoadData(...)
4. │ └─Eunomia::loadDataFiles(...)
5. └─base::loadNamespace(x)
6. ├─base::namespaceImport(...)
7. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
8. ├─base::namespaceImport(...)
9. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
10. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-covariateData.R:174:3'): .assembleCovariateData correctly builds covariates from raw data ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─Eunomia::getEunomiaConnectionDetails() at test-covariateData.R:174:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-covariateData.R:280:3'): getDbOcmCovariateData produces valid CovariateData with Eunomia ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─Eunomia::getEunomiaConnectionDetails() at test-covariateData.R:280:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:127:3'): buildConceptSetQuery warns on NA flag ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─testthat::expect_warning(buildConceptSetQuery(expr), "includeDescendants.*is NA") at test-handleConceptSets.R:127:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr)
8. └─base::loadNamespace(x)
9. ├─base::namespaceImport(...)
10. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
11. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:147:3'): buildConceptSetQuery generates SQL for plain concept ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(...) at test-handleConceptSets.R:147:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:163:3'): buildConceptSetQuery generates SQL for includeDescendants ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr, vocabularyDatabaseSchema = "vocab") at test-handleConceptSets.R:163:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:173:3'): buildConceptSetQuery generates SQL for includeMapped ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr, vocabularyDatabaseSchema = "vocab") at test-handleConceptSets.R:173:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:187:3'): buildConceptSetQuery generates SQL for descendants + mapped ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr, vocabularyDatabaseSchema = "vocab") at test-handleConceptSets.R:187:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:198:3'): buildConceptSetQuery handles exclusion with anti-join ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr, vocabularyDatabaseSchema = "vocab") at test-handleConceptSets.R:198:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:215:3'): buildConceptSetQuery parses JSON input ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(...) at test-handleConceptSets.R:215:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:228:3'): buildConceptSetQuery handles multiple plain concepts ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr, vocabularyDatabaseSchema = "vocab") at test-handleConceptSets.R:228:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:239:3'): buildConceptSetQuery uses default conceptSetName ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr, vocabularyDatabaseSchema = "vocab") at test-handleConceptSets.R:239:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:247:3'): buildConceptSetQuery uses default vocabularyDatabaseSchema token ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr) at test-handleConceptSets.R:247:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:266:3'): buildConceptSetQueries returns named list ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQueries(...) at test-handleConceptSets.R:266:3
2. │ └─OdysseusCharacterizationModule:::map2(...)
3. │ └─base::mapply(.f, .x, .y, MoreArgs = list(...), SIMPLIFY = FALSE)
4. │ └─OdysseusCharacterizationModule (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
5. │ └─base::eval(expr, envir = local_env)
6. │ └─base::eval(expr, envir = local_env)
7. │ └─OdysseusCharacterizationModule::buildConceptSetQuery(...)
8. └─base::loadNamespace(x)
9. ├─base::namespaceImport(...)
10. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
11. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:281:3'): buildConceptSetQueries uses custom names ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQueries(...) at test-handleConceptSets.R:281:3
2. │ └─OdysseusCharacterizationModule:::map2(...)
3. │ └─base::mapply(.f, .x, .y, MoreArgs = list(...), SIMPLIFY = FALSE)
4. │ └─OdysseusCharacterizationModule (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
5. │ └─base::eval(expr, envir = local_env)
6. │ └─base::eval(expr, envir = local_env)
7. │ └─OdysseusCharacterizationModule::buildConceptSetQuery(...)
8. └─base::loadNamespace(x)
9. ├─base::namespaceImport(...)
10. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
11. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:299:3'): buildConceptSetQueries handles empty items gracefully ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQueries(...) at test-handleConceptSets.R:299:3
2. │ └─OdysseusCharacterizationModule:::map2(...)
3. │ └─base::mapply(.f, .x, .y, MoreArgs = list(...), SIMPLIFY = FALSE)
4. │ └─OdysseusCharacterizationModule (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
5. │ └─base::eval(expr, envir = local_env)
6. │ └─base::eval(expr, envir = local_env)
7. │ └─OdysseusCharacterizationModule::buildConceptSetQuery(...)
8. └─base::loadNamespace(x)
9. ├─base::namespaceImport(...)
10. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
11. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:422:3'): buildConceptSetQuery handles excluded items with descendants ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr, vocabularyDatabaseSchema = "vocab") at test-handleConceptSets.R:422:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:432:3'): buildConceptSetQuery handles excluded items with mapped ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr, vocabularyDatabaseSchema = "vocab") at test-handleConceptSets.R:432:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-handleConceptSets.R:443:3'): buildConceptSetQuery handles excluded items with both flags ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::buildConceptSetQuery(expr, vocabularyDatabaseSchema = "vocab") at test-handleConceptSets.R:443:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:74:3'): singleNodeSetting produces specs for single base domain ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:74:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:118:3'): singleNodeSetting creates specs per domain x window ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:118:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:143:3'): singleNodeSetting handles ATC — one spec per level per window ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:143:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:176:3'): singleNodeSetting resolves conceptIdCol for drug tables without ATC ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:176:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:200:3'): singleNodeSetting overlap falls back to start when no end date ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-singleNodeSetting.R:200:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─OdysseusCharacterizationModule::singleNodeSetting(...)
8. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
9. └─base::loadNamespace(x)
10. ├─base::namespaceImport(...)
11. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
12. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:226:3'): singleNodeSetting overlap works for era tables ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:226:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:239:3'): singleNodeSetting aggregated param propagates ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:239:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:272:3'): singleNodeSetting analysis IDs are unique ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:272:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:307:3'): singleNodeSetting generates cohort feature specs ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:307:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:343:3'): singleNodeSetting auto-generates cohortNames when NULL ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:343:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:381:3'): singleNodeSetting generates concept set specs ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:381:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:419:3'): singleNodeSetting concept set multiple tables ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:419:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:449:3'): singleNodeSetting warns when no specs generated ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-singleNodeSetting.R:449:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. ├─OdysseusCharacterizationModule::singleNodeSetting(...)
8. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
9. └─base::loadNamespace(x)
10. ├─base::namespaceImport(...)
11. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
12. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:465:3'): print.singleNodeSettingList produces readable output ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:465:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:477:3'): print.singleNodeSpec produces readable output ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:477:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:489:3'): print.singleNodeSettingList returns invisibly ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:489:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:499:3'): print.singleNodeSpec returns invisibly ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:499:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-singleNodeSetting.R:525:3'): print.singleNodeSettingList truncates at 5 ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule::singleNodeSetting(...) at test-singleNodeSetting.R:525:3
2. │ └─OdysseusCharacterizationModule:::.returnSqlBlock(aggregated = aggregated)
3. └─base::loadNamespace(x)
4. ├─base::namespaceImport(...)
5. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
6. └─base (local) runHook(".onLoad", env, package.lib, package)
── Error ('test-utilits.R:80:3'): .returnSqlBlock returns non-empty SQL string ──
Error: .onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: JAVA_HOME cannot be determined from the Registry
Backtrace:
▆
1. ├─OdysseusCharacterizationModule:::.returnSqlBlock() at test-utilits.R:80:3
2. └─base::loadNamespace(x)
3. ├─base::namespaceImport(...)
4. └─base::loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]])
5. └─base (local) runHook(".onLoad", env, package.lib, package)
[ FAIL 57 | WARN 60 | SKIP 3 | PASS 328 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64