Representation for Glycan Compositions and Structures

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Documentation for package ‘glyrepr’ version 0.7.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_glycan_composition	Convert to Glycan Composition
as_glycan_composition.character	Convert to Glycan Composition
as_glycan_composition.default	Convert to Glycan Composition
as_glycan_composition.glyrepr_composition	Convert to Glycan Composition
as_glycan_composition.glyrepr_structure	Convert to Glycan Composition
as_glycan_structure	Convert to Glycan Structure Vector
available_monosaccharides	Get Available Monosaacharides
available_substituents	Available Substituents
convert_to_generic	Convert Monosaccharides to Generic Type
convert_to_generic.character	Convert Monosaccharides to Generic Type
convert_to_generic.glyrepr_composition	Convert Monosaccharides to Generic Type
convert_to_generic.glyrepr_structure	Convert Monosaccharides to Generic Type
count_mono	Get the Number of Monosaccharides
count_mono.glyrepr_composition	Get the Number of Monosaccharides
count_mono.glyrepr_structure	Get the Number of Monosaccharides
get_anomer	Get the Anomeric information
get_mono_type	Get Monosaccharide Types
get_mono_type.character	Get Monosaccharide Types
get_mono_type.glyrepr_composition	Get Monosaccharide Types
get_mono_type.glyrepr_structure	Get Monosaccharide Types
get_structure_graphs	Access Individual Glycan Structures
glycan_composition	Create a Glycan Composition
glycan_structure	Create a Glycan Structure Vector
has_linkages	Determine if a Glycan Structure has Linkages
is_glycan_composition	Create a Glycan Composition
is_glycan_structure	Create a Glycan Structure Vector
is_known_monosaccharide	Check if a Monosaccharide is Known
normalize_substituents	Normalize Substituent String
n_glycan_core	Example Glycan Structures
o_glycan_core_1	Example Glycan Structures
o_glycan_core_2	Example Glycan Structures
possible_linkages	Generate Possible Linkages
remove_linkages	Remove All Linkages from a Glycan
remove_substituents	Remove All Substituents from a Glycan
severy	Test Predicates on Glycan Structure Vectors
simap	Map Functions Over Glycan Structure Vectors with Indices
simap_chr	Map Functions Over Glycan Structure Vectors with Indices
simap_dbl	Map Functions Over Glycan Structure Vectors with Indices
simap_int	Map Functions Over Glycan Structure Vectors with Indices
simap_lgl	Map Functions Over Glycan Structure Vectors with Indices
simap_structure	Map Functions Over Glycan Structure Vectors with Indices
simap_vec	Map Functions Over Glycan Structure Vectors with Indices
smap	Map Functions Over Glycan Structure Vectors
smap2	Map Functions Over Two Glycan Structure Vectors
smap2_chr	Map Functions Over Two Glycan Structure Vectors
smap2_dbl	Map Functions Over Two Glycan Structure Vectors
smap2_int	Map Functions Over Two Glycan Structure Vectors
smap2_lgl	Map Functions Over Two Glycan Structure Vectors
smap2_structure	Map Functions Over Two Glycan Structure Vectors
smap2_vec	Map Functions Over Two Glycan Structure Vectors
smap_chr	Map Functions Over Glycan Structure Vectors
smap_dbl	Map Functions Over Glycan Structure Vectors
smap_int	Map Functions Over Glycan Structure Vectors
smap_lgl	Map Functions Over Glycan Structure Vectors
smap_predicates	Test Predicates on Glycan Structure Vectors
smap_structure	Map Functions Over Glycan Structure Vectors
smap_unique	Apply Function to Unique Structures Only
smap_vec	Map Functions Over Glycan Structure Vectors
snone	Test Predicates on Glycan Structure Vectors
spmap	Map Functions Over Glycan Structure Vectors and Multiple Arguments
spmap_chr	Map Functions Over Glycan Structure Vectors and Multiple Arguments
spmap_dbl	Map Functions Over Glycan Structure Vectors and Multiple Arguments
spmap_int	Map Functions Over Glycan Structure Vectors and Multiple Arguments
spmap_lgl	Map Functions Over Glycan Structure Vectors and Multiple Arguments
spmap_structure	Map Functions Over Glycan Structure Vectors and Multiple Arguments
spmap_vec	Map Functions Over Glycan Structure Vectors and Multiple Arguments
ssome	Test Predicates on Glycan Structure Vectors
structure_to_iupac	Convert Glycan Structure to IUPAC-like Sequence
valid_linkages	Check if Linkages are Valid