Canonical Associative Learning Models and their Representations

Documentation for package ‘calmr’ version 0.8.1

Help Pages

-- A --

-- B --

BIC	CalmrFit methods
BIC-method	CalmrFit methods

-- C --

CalmrDesign-class	S4 class for calmr designs
CalmrDesign-methods	CalmrDesign methods
CalmrExperiment-class	S4 class for calmr experiments.
CalmrExperiment-methods	CalmrExperiment methods
CalmrFit-class	S4 class for calmr Fit
CalmrFit-methods	CalmrFit methods
CalmrModel-class	S4 class for calmr Models
CalmrModel-methods	CalmrModel methods
CalmrRSA-class	S4 class for calmr representational similarity analysis
CalmrRSA-methods	CalmrRSA methods
calmr_model_graph	Create a graph with calmr data
calmr_verbosity	Set verbosity options for calmr
compare_models	Run models given a set of parameters

-- D --

design	CalmrExperiment methods
design-method	CalmrExperiment methods

-- E --

-- F --

-- G --

get_design	Get basic designs
get_graph_opts	Create a graph with calmr data
get_model	Model information functions
get_optimizer_opts	Get optimizer options
get_parameters	Get model parameters
get_plot_opts	General plotting options
get_timings	Get timing design parameters
graph	CalmrExperiment methods
graph-method	CalmrExperiment methods
graph-method	CalmrModel methods

-- L --

CalmrExperiment methods

-- M --

make_experiment	Make CalmrExperiment
mapping	CalmrDesign methods
mapping-method	CalmrDesign methods
model_information	Model information functions
model_outputs	Model information functions
model_parameters	Model information functions

-- N --

NLL	CalmrFit methods
NLL-method	CalmrFit methods

-- P --

parameters	CalmrExperiment methods
parameters-method	CalmrExperiment methods
parameters-method	CalmrModel methods
parameters<-	CalmrExperiment methods
parameters<--method	CalmrExperiment methods
parameters<--method	CalmrModel methods
parse	CalmrExperiment methods
parse-method	CalmrExperiment methods
parse-method	CalmrModel methods
parsed_results	CalmrExperiment methods
parsed_results-method	CalmrExperiment methods
parsed_results-method	CalmrModel methods
parse_design	Parse design data.frame
patch_graphs	Create a graph with calmr data
patch_plots	General plotting options
pati	Rat responses from Patittucci et al. 2016
phase_parser	Parses a phase string
plot	CalmrExperiment methods
plot-method	CalmrExperiment methods
plot-method	CalmrModel methods
plot-method	CalmrRSA methods
plotting_functions	General plotting functions
plotting_options	General plotting options
plot_common_scale	General plotting options
plot_targeted_complex_trials	General plotting functions
plot_targeted_tbins	General plotting functions
plot_targeted_trials	General plotting functions
plot_targeted_typed_trials	General plotting functions
plot_tbins	General plotting functions
plot_trials	General plotting functions
predict	CalmrFit methods
predict-method	CalmrFit methods

-- R --

raw_results	CalmrExperiment methods
raw_results-method	CalmrExperiment methods
raw_results-method	CalmrModel methods
results	CalmrExperiment methods
results-method	CalmrExperiment methods
rsa	Perform representational similarity analysis
run	CalmrModel methods
run-method	CalmrModel methods
run_experiment	Run experiment

-- S --

set_calmr_palette	Get/set the colour/fill palette for plots
set_reward_parameters	Set reward parameters for ANCCR model
show-method	CalmrDesign methods
show-method	CalmrExperiment methods
show-method	CalmrFit methods
show-method	CalmrModel methods
show-method	CalmrRSA methods
supported_families	Model information functions
supported_models	Model information functions
supported_optimizers	Model information functions
supported_plots	Model information functions
supported_timed_models	Model information functions

-- T --