| plot.SIR | Graphical output of SIR |
| plot.SIR_bootstrap | Graphical output of SIR_bootstrap |
| plot.SIR_threshold | Graphical output of SIR_threshold |
| plot.SIR_threshold_bootstrap | Graphical output of SIR_threshold_bootstrap |
| plot.SIR_threshold_opt | Graphical output of SIR_threshold_opt |
| SIR | Classic SIR |
| SIR_bootstrap | Bootstrap SIR |
| SIR_threshold | SIR threshold |
| SIR_threshold_bootstrap | SIR optimally thresholded on bootstraped replications |
| SIR_threshold_opt | SIR optimally thresholded |