| binnest | Binary Random Effects Models with Two Levels of Nesting | 
| biv.betab | Bivariate Beta-binomial Regression Models | 
| biv.binom | Marginal Bivariate Binomial Regression Models | 
| capture | Capture-recapture Models | 
| catmiss | Marginal Probabilities for Categorical Repeated Measurements with Missing Data | 
| chidden | Continuous-time Hidden Markov Chain Models | 
| cphidden | Changepoint Location using a Continuous-time Two-state Hidden Markov Chain | 
| deviance.gar | Generalized Autoregression Models | 
| deviance.gausscop | Multivariate Gaussian Copula with Arbitrary Marginals | 
| deviance.hnlm | Generalized Nonlinear Regression using h-likelihood for a Random Parameter | 
| deviance.kalcount | Repeated Measurements Models for Counts with Frailty or Serial Dependence | 
| deviance.kalseries | Repeated Measurements Models for Continuous Variables with Frailty or Serial Dependence | 
| fitted.gar | Generalized Autoregression Models | 
| fitted.gausscop | Multivariate Gaussian Copula with Arbitrary Marginals | 
| fitted.hnlm | Generalized Nonlinear Regression using h-likelihood for a Random Parameter | 
| fitted.kalcount | Repeated Measurements Models for Counts with Frailty or Serial Dependence | 
| fitted.kalseries | Repeated Measurements Models for Continuous Variables with Frailty or Serial Dependence | 
| gar | Generalized Autoregression Models | 
| gausscop | Multivariate Gaussian Copula with Arbitrary Marginals | 
| glmm | Generalized Linear Mixed Models | 
| gnlmix | Generalized Nonlinear Regression with a Random Parameter | 
| gnlmm | Generalized Nonlinear Mixed Models | 
| gnlmm3 | Generalized Nonlinear Mixed Models for Three-parameter Distributions | 
| hidden | Discrete-time Hidden Markov Chain Models | 
| hnlmix | Generalized Nonlinear Regression using h-likelihood for a Random Parameter | 
| kalcount | Repeated Measurements Models for Counts with Frailty or Serial Dependence | 
| kalseries | Repeated Measurements Models for Continuous Variables with Frailty or Serial Dependence | 
| marg.hom | Marginal Homogeneity Models | 
| nbkal | Negative Binomial Models with Kalman Update | 
| plot.hidden | Discrete-time Hidden Markov Chain Models | 
| print.gar | Generalized Autoregression Models | 
| print.gausscop | Multivariate Gaussian Copula with Arbitrary Marginals | 
| print.hnlm | Generalized Nonlinear Regression using h-likelihood for a Random Parameter | 
| print.kalcount | Repeated Measurements Models for Counts with Frailty or Serial Dependence | 
| print.kalseries | Repeated Measurements Models for Continuous Variables with Frailty or Serial Dependence | 
| print.marginal | Marginal Homogeneity Models | 
| print.nbkal | Negative Binomial Models with Kalman Update | 
| residuals.gar | Generalized Autoregression Models | 
| residuals.gausscop | Multivariate Gaussian Copula with Arbitrary Marginals | 
| residuals.hnlm | Generalized Nonlinear Regression using h-likelihood for a Random Parameter | 
| residuals.kalcount | Repeated Measurements Models for Counts with Frailty or Serial Dependence | 
| residuals.kalseries | Repeated Measurements Models for Continuous Variables with Frailty or Serial Dependence | 
| setup | Capture-recapture Models | 
| volatility | Generalized Autoregression Models | 
| volatility.gar | Generalized Autoregression Models |