| NEWS | R Documentation |
clean out spurious .RData file; version bump
add NAMESPACE
tweak source code to avoid warnings; comment out unused BUGSout, etc.
allow r*(m+1) informative prior in many-to-many (suggestion of Julia Reisser)
document/boost/test for hardcoded limits in C code (thanks to Jennifer Mandel)
show.data arg in summary.mixstock.est
added resample.index to internal storage
improved xyplot
added hooks for coeftab/coefplot2 package
changed to NEWS.Rd format
minor tweaks to Rd files
fix manymany.txt and TO code for double definition
changed working directory for recent R2WinBUGS changes
JAGS now works (but not with "BB" code)
minor vignette improvements
use layout() for legends, check for text truncation
added R2jags support
tweaked manymany.txt for R2jags/WinBUGS compatibility
changed "manymany.bug" call to "manymany.txt" call to work around R2WinBUGS attempt to write to system dir
added silent=TRUE to several try() clauses
version bump for move to r-forge
another plotting bug
remove WINE/useWINE/WINEPATH from pm.wbugs, mm.wbugs, sourcesize.wbugs (can be passed to bugs via ... ?)
tweaked plot.mixstock.data (horizontal plotting now default, more legend options)
tweaked plot.mixstock.est (more options for many-to-many plots)
added prior settings for mixed stocks in many-to-many analysis
identified (but didn't fix) long-file-path bug for R2WinBUGS
messed with internal structure of resample, confint, etc. for many-to-many results. $resample is the sims.matrix object (flat matrix, parameters x chain); $resamplist is the sims.list object (chain x parameter matrix)
slight changes to summary()
added nsource(), nmix(), nmark() to try to abstract some of this info
record timing info for R2WinBUGS runs
tiny tweaks to C code to satisfy '-Wall -pedantic' flags
minor changes for documentation compliance with checkDocStyle, codetools:::checkUsagePackage("mixstock")
fixed plotting bug (!)
small bugs in as.mixstock.est for many-to-many (had M and R reversed in several places)
started to add support for sourcesize in mixstock.data objects
moved bugs code locators inside functions (LazyLoad problem)
fixed mixed stock labeling stuff
tweaking many-to-many code (TO-style BUGS code)
tiny tweak in utils.c/h to avoid sign() conflict with R
simmixstock2 allows random start
added stub for UML start for mm.wbugs
added a bit more support for many-to-many
first version called "mixstock"
change names to mixstock, de-turtle-ize
adding multiple-mixed-stock support
changed n.iter/n.burn/n.thin to match R2WinBUGS default
fixed bug in plot.turtle.est (changed cex to cex.axis)
add preliminary R2WinBUGS functionality
more general cleanup, remove bbmisc dependency (add plotrix dependency), change plot formats, fix up vignette ...
version bump for R 2.0.x should fix all the stuff!
general cleanup