haplo.stats: Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous

A suite of R routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em, haplo.glm, haplo.score, haplo.power, and seqhap; all of which have detailed examples in doc/manualHaploStats.pdf.

Version: 1.7.1
Depends: R (≥ 3.0.0), methods, stats, graphics
Imports: rms
Published: 2015-08-14
Author: Sinnwell JP, Schaid DJ
Maintainer: Jason P. Sinnwell <sinnwell.jason at mayo.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: http://www.mayo.edu/research/labs/statistical-genetics-genetic-epidemiology/software
NeedsCompilation: yes
Materials: NEWS
In views: Genetics
CRAN checks: haplo.stats results


Reference manual: haplo.stats.pdf
Package source: haplo.stats_1.7.1.tar.gz
Windows binaries: r-devel: haplo.stats_1.7.1.zip, r-release: haplo.stats_1.7.1.zip, r-oldrel: haplo.stats_1.7.1.zip
OS X Snow Leopard binaries: r-release: haplo.stats_1.7.1.tgz, r-oldrel: haplo.stats_1.6.11.tgz
OS X Mavericks binaries: r-release: haplo.stats_1.7.1.tgz
Old sources: haplo.stats archive

Reverse dependencies:

Reverse depends: BVS, haplo.ccs, Rsampletrees, SNPassoc
Reverse imports: BIGDAWG, IFP
Reverse suggests: gap, GenABEL