geneticae: Statistical Tools for the Analysis of Multi Environment Agronomic Trials
Provides tools for the analysis of multi-environment agronomic trials, with a specific focus on plant breeding experiments. Implements the Additive Main effects and Multiplicative Interaction (AMMI) model (Gauch, 1992, ISBN:9780444892409) and the Site Regression (SREG) model (Cornelius, 1996, <doi:10.1201/9780367802226>). To ensure reliable results even with outliers or missing data, it includes robust versions of AMMI (Rodrigues et al., 2016, <doi:10.1093/bioinformatics/btv533>) and SREG (Angelini et al., 2022, <doi:10.1080/15427528.2022.2051217>). Furthermore, the package offers advanced imputation techniques for multi-environment data, covering classical methodologies (Arciniegas-Alarcón et al., 2014, <doi:10.2478/bile-2014-0006>) and recently published imputation methods for MET data (Angelini et al., 2024, <doi:10.1007/s10681-024-03344-z>).
| Version: | 1.0.1 |
| Depends: | R (≥ 2.12.0) |
| Imports: | stats, ggforce, ggplot2, scales, MASS, pcaMethods, rrcov, dplyr, missMDA, tidyr, rlang, corpcor |
| Suggests: | agridat, spelling, knitr, rmarkdown, patchwork, testthat |
| Published: | 2026-04-21 |
| DOI: | 10.32614/CRAN.package.geneticae |
| Author: | Julia Angelini 
[aut, cre],
Marcos Prunello
[aut],
Gerardo Cervigni [aut] |
| Maintainer: | Julia Angelini <jangelini_93 at hotmail.com> |
| BugReports: | https://github.com/jangelini/geneticae/issues |
| License: | GPL-2 |
| URL: | https://jangelini.github.io/geneticae/, https://github.com/jangelini/geneticae |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README, NEWS |
| In views: | Agriculture, MissingData |
| CRAN checks: | geneticae results |
Documentation:
| Reference manual: | geneticae.html , geneticae.pdf |
| Vignettes: |
How to use the geneticae package (source, R code) How to use the geneticae Shiny App (source, R code) |
Downloads:
| Package source: | geneticae_1.0.1.tar.gz |
| Windows binaries: | r-devel: geneticae_1.0.0.zip, r-release: geneticae_1.0.1.zip, r-oldrel: geneticae_1.0.1.zip |
| macOS binaries: | r-release (arm64): geneticae_1.0.1.tgz, r-oldrel (arm64): geneticae_0.4.0.tgz, r-release (x86_64): geneticae_1.0.1.tgz, r-oldrel (x86_64): geneticae_1.0.1.tgz |
| Old sources: | geneticae archive |
Linking:
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