FSAtools: Fragment Analysis and Capillary Sequencing Tool Kit
A flexible and interfaced framework for importing, processing and ploting Applied Biosystems data files. Application to Reverse-Transcriptase Multiplex Ligation-dependent Probe Amplification (RT-MLPA) gene-expression profiling and classification is illustrated in Mareschal, Ruminy et al (2015) <doi:10.1016/j.jmoldx.2015.01.007>. Gene-fusion detection and Sanger sequencing are illustrated in Mareschal, Palau et al (2021) <doi:10.1182/bloodadvances.2020002517>. Examples are provided for genotyping applications as well.
| Version: |
2.0.5 |
| Depends: |
graphics, grDevices, stats, utils, R (≥ 2.10) |
| Imports: |
methods |
| Suggests: |
Biostrings, parallel, tcltk, tools |
| Published: |
2023-08-18 |
| Author: |
Sylvain Mareschal [aut, cre],
Philippe Ruminy [dtc, ctb],
Jean R. Lobry [ctb],
Fabrice Jardin [ths] |
| Maintainer: |
Sylvain Mareschal <mareschal at ovsa.fr> |
| BugReports: |
https://github.com/maressyl/R.FSAtools/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://bioinformatics.ovsa.fr/FSAtools |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
FSAtools results |
Documentation:
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