CAMML: Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling
Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.6.0) |
| Imports: | VAM, Seurat (≥ 4.0.0), MASS, Matrix (≥ 1.3.3), utils, BiocManager, org.Hs.eg.db, org.Dr.eg.db, org.Mm.eg.db, AnnotationDbi, SeuratObject (≥ 4.0.0), methods, edgeR |
| Suggests: | sctransform (≥ 0.3.2) |
| Published: | 2023-11-13 |
| DOI: | 10.32614/CRAN.package.CAMML |
| Author: | H. Robert Frost [aut],
Courtney Schiebout
 [aut, cre] |
| Maintainer: | Courtney Schiebout <courtney.t.schiebout.gr at dartmouth.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: | Dartmouth College |
| NeedsCompilation: | no |
| CRAN checks: | CAMML results [issues need fixing before 2025-11-15] |
Documentation:
| Reference manual: | CAMML.html , CAMML.pdf |
| Vignettes: |
CAMML_FigureVignette (source) CAMMLQuick (source) CAMML (source) ChIMP (source) |
Downloads:
| Package source: | CAMML_1.0.0.tar.gz |
| Windows binaries: | r-devel: CAMML_1.0.0.zip, r-release: CAMML_1.0.0.zip, r-oldrel: CAMML_1.0.0.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): CAMML_1.0.0.tgz |
| Old sources: | CAMML archive |
Linking:
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