Depends: R (>= 2.10)
Imports: MASS, mvtnorm, nnet, ellipse, latentnet, vegan, e1071

Depends: R (>= 3.5.0)
Imports: R6, microeco (>= 1.3.0), magrittr, dplyr, igraph, reshape2,
ggpubr, ggplot2
Suggests: rgexf, ape, file2meco, agricolae

Imports: R6, ggplot2 (>= 3.4.0), microeco (>= 0.20.0), GUniFrac,
magrittr, ggpubr, lmerTest, betareg, glmmTMB

Suggests: knitr, ggplot2, rmarkdown, markdown, parallel

Depends: R (>= 3.4.0), medfate (>= 4.3.1)
Imports: cli, ggplot2, dplyr, httr, jsonlite, lifecycle, methods,
meteoland (>= 2.0.2), rlang, Rcpp (>= 0.12.12), parallel, sf,
shiny, stars, terra, tidyterra, tidyr, tibble, stats
LinkingTo: Rcpp, meteoland, medfate
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: doParallel, doRNG, foreach, MASS, mvtnorm, stats, survival,
utils
Suggests: flextable, knitr, officer, rmarkdown, pander

Imports: Rcpp (>= 0.12.10), RcppNumerical, methods, officer, flextable,
devEMF, mvtnorm, shiny, shinydashboard, shinyMatrix, foreach,
parallel, doParallel, MASS, rootSolve, lme4, lmerTest, pbkrtest

Depends: R (>= 2.15.1), MASS, Matrix, mvtnorm, sandwich
Imports: lpSolve, Hmisc, lme4 (>= 1.0), stats, graphics, grDevices,
utils, boot
Suggests: mgcv, quantreg, VGAM, SuppDists, survival, parallel,
testthat, speedglm

Suggests: knitr, rmarkdown, markdown, learnr

Suggests: testthat, knitr, ggplot2, gridExtra

Depends: R (>= 2.10)
Suggests: knitr, rmarkdown, dplyr, ggplot2, maps, magrittr, testthat

Depends: R (>= 2.10)
Suggests: testthat, covr, knitr, rmarkdown, spelling

Depends: R (>= 3.5.0)
Suggests: rmarkdown, knitr, ggplot2, tidyr, dplyr, magrittr, tm,
patchwork, wordcloud2

Imports: HDMT, locfdr, qqman, qvalue, fdrtool

Depends: R (>= 4.0.0)
Imports: cluster, matrixStats (>= 1.0.0), nnet (>= 7.3-0), seriation,
stringdist, TraMineR (>= 1.6), WeightedCluster
Suggests: knitr, rmarkdown, viridisLite (>= 0.4.0)

Imports: survival , dplyr , tidyr , ggplot2 , mvtnorm , matrixcalc

Depends: R (>= 3.2.0), methods, Matrix (>= 1.4-2)
Suggests: mefa

Depends: R (>= 3.5.0), SKAT, pedgene, gdsfmt
Imports: AnnotationDbi, DBI, GenomeInfoDb, RSQLite, methods, famSKATRC,
kinship2
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, formatR, TxDb.Hsapiens.UCSC.hg19.knownGene,
org.Hs.eg.db