Imports: stats, utils, ggplot2, pROC, qpdf
Suggests: testthat

Imports: Matrix, stats, Rcpp, CORElearn, RSpectra,
LinkingTo: Rcpp

Depends: stats, R (>= 3.6.0), stats4, lattice, methods
Imports: GPArotation, gridExtra, Matrix (>= 1.5-0), Rcpp, mgcv, vegan,
Deriv, splines, pbapply (>= 1.3-0), dcurver
LinkingTo: Rcpp, RcppArmadillo
Suggests: boot, latticeExtra, directlabels, shiny, knitr, markdown,
Rsolnp, nloptr, sirt, plink, mirtCAT

Imports: lattice, stats, Rcpp, methods, markdown, pbapply, lpSolve

Imports: Rcpp (>= 0.12.17), stats, GPArotation

Depends: R (>= 3.1)
Imports: GPArotation, mirtjml, graphics, stats

Imports: mvtnorm, stats, MASS, norm, methods

Imports: grDevices, graphics, stats, tcltk

Suggests: mixAK (>= 2.6), BRugs (>= 0.8-6)

Imports: stats, Matrix, MASS, ucminf, numDeriv, foreach, mlogit

Depends: R (>= 3.5.0), phyloseq, ggplot2 (>= 3.5.0), dada2, dplyr,
purrr
Imports: ape, lifecycle, rlang, stats
Suggests: adespatial, ANCOMBC, BiocManager, Biostrings, circlize,
ComplexUpset, DECIPHER, DESeq2, devtools, DT, edgeR,
formattable, ggalluvial, ggfittext, gghalves, ggh4x,
ggstatsplot, ggridges, ggVennDiagram, glmulti, gtsummary,
grDevices, grid, gridExtra, here, httr, iNEXT, indicspecies,
jsonlite, knitr, magrittr, metacoder, methods, mia, mixtools,
multcompView, networkD3, pak, patchwork, permute, phangorn,
phyloseqGraphTest, pbapply, plotly, plyr, reshape2, rmarkdown,
rotl, Rtsne, scales, seqinr, SRS, stringr,
SummarizedExperiment, testthat (>= 3.0.0), tibble, tidyr,
treemapify, vegan, venneuler, vctrs, viridis, withr

Imports: data.table, devtools, ggplot2, gridExtra, parallel, Rcpp (>=
0.11.1), stats, xtable

Suggests: mice, knitr, rmarkdown, testthat

Depends: R (>= 2.10)
Imports: forrel, pedtools, plotly, dplyr, highcharter, tidyr,
tidyverse, DirichletReg, stats, purrr, patchwork, reshape2,
graphics, ggplot2, shiny

Depends: R (>= 3.2.3), vegan, ape, aSPU,cluster

Depends: R (>= 3.5.0), mixtools, boot, tseries

Depends: R (>= 3.5.0)
Imports: Amelia, data.table, dplyr, ggdendro, ggplot2, Hmisc, ltm,
magrittr, MASS, Matrix, mi, mice, missForest, missMDA,
pcaMethods, plyr, rlang, stats, utils, tidyr, VIM
Suggests: testthat, knitr, rmarkdown, devtools