Imports: car, e1071, gbm, partykit, randomForest, reshape2, sqldf,
stringr, stats, ggplot2, utils

Depends: R (>= 3.5.0)
Imports: checkmate (>= 1.9.1), Rcpp (>= 1.0.0)
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat (>= 2.0.0), cluster

Imports: utils, combinat, limSolve, RSpectra, igraph, igraphdata, stats

Depends: R (>= 3.00)
Imports: Rcpp (>= 0.12.0), methods, MASS, knitr
LinkingTo: Rcpp, RcppArmadillo
Suggests: gsl (>= 1.8-3), hypergeo(>= 1.0), rmarkdown, testthat, crch,
ggplot2

Depends: R (>= 3.6)
Imports: data.table, ggdist (>= 3.2.0), ggplot2 (>= 3.4.0), lifecycle,
methods, rlang, scoringRules, stats
Suggests: kableExtra, knitr, magrittr, rmarkdown, testthat, vdiffr

Imports: Matrix, survival, pracma, foreach, doParallel, parallel, Rcpp

Imports: cli, methods, irlba, igraph, RANN, Matrix, pbapply,
RhpcBLASctl

Depends: R (>= 3.5.0)
Imports: dplyr, dynutils (>= 1.0.3), dynwrap, grDevices, ggplot2 (>=
2.0), lmds, MASS, Matrix, mclust, methods, pbapply, pheatmap,
princurve (>= 2.1.4), purrr, ranger, RANN, RColorBrewer,
reshape2, stats, tidyr, TSP
Suggests: anndata, covr, knitr, reticulate, rmarkdown, Seurat,
SingleCellExperiment, testthat (>= 2.1.0)

Imports: glasso, stats, grDevices, graphics
Suggests: lars

Depends: R (>= 3.5.0), ggplot2, ggpubr, stats

Imports: Seurat, dplyr, rdist, energy, stats

Depends: R (>= 3.5.0)
Imports: dplyr, GenomicRanges, magrittr, MASS, matrixStats, mixtools,
nimble, rlang, Rsamtools, tibble, tidyr, utils
Suggests: gplots, IRanges, knitr, readr, rmarkdown, testthat (>= 3.0.0)

Imports: ggplot2, scan (>= 0.57.0), stats, utils, mblm

Depends: R (>= 2.10)
Imports: ggplot2, glmpca, Seurat, magrittr, dplyr, tidyr, purrr,
Matrix, Rdpack, SeuratObject, WGCNA, broom, stats, methods,
matrixStats
Suggests: renv, testthat (>= 3.0.0), vdiffr, rmarkdown, knitr, qpdf

Depends: R (>= 4.0.0)
Suggests: AnnotationDbi, assertthat, AUCell, circlize, cli, cluster,
clusterProfiler, colorspace, ComplexHeatmap, covr, decoupleR,
dplyr (>= 1.1.0), enrichplot, forcats, ggalluvial, ggbeeswarm,
ggdist, ggExtra, ggh4x, ggnewscale, ggplot2 (>= 3.4.0),
ggplotify, ggrastr, ggrepel, ggridges, ggsignif, graphics,
infercnv, knitr, labeling, magrittr, MASS, Matrix, methods,
Nebulosa, org.Hs.eg.db, patchwork, pheatmap, plyr, purrr, qpdf,
RColorBrewer, rjags, rlang, rmarkdown, scales, scattermore,
Seurat, SeuratObject, sf, stringr, svglite, testthat (>=
3.0.0), tibble, tidyr, UCell, viridis, withr