Depends: R (>= 3.5.0)
Imports: digest, MASS, Matrix (>= 1.2-16), methods, Rcpp, RcppParallel,
parallel, lifecycle
LinkingTo: Rcpp, RcppEigen (>= 0.3.3.9.4), RcppParallel, StanHeaders
(>= 2.10.0.2), BH (>= 1.69.0-1), rpf (>= 0.45), Matrix
Suggests: mvtnorm, numDeriv, roxygen2 (>= 6.1), rpf (>= 0.45),
snowfall, lme4, covr, testthat, umx, ifaTools, knitr, markdown,
rmarkdown, reshape2, ggplot2

Imports: methods, graphics, grid, utils, stats, grDevices, crayon,
plyr, stringr, abind, rgl, colorspace, psych, XML, pvclust,
openxlsx, tidyr, dplyr, scales, igraph
Suggests: testthat (>= 2.1.0), covr

Imports: graphics, grDevices, utils, shiny, shinyjs, shinyBS,
shinythemes, shinyWidgets, shinydashboard, shinydashboardPlus
(>= 2.0.0), shinycssloaders, shinyFeedback, rintrojs,
formattable, openxlsx, DT, magrittr, dplyr, stringr, reshape2,
scales, splines, igraph, tidyr, withr, RColorBrewer, tidyverse
Suggests: knitr, rmarkdown, covr, testthat

Depends: grid
Imports: httr, ssh, xml2, ggmap, ggplot2, magick, utils, stats, R6,
dbscan, cluster, DBI, RPresto
Suggests: knitr, BiocStyle, RUnit, BiocGenerics, rmarkdown, markdown

Depends: R (>= 4.1.0)
Imports: methods, data.table, jsonlite, yaml, osfr, caTools, hyperSpec,
mmand, plotly, digest, signal, glmnet, jpeg, shiny
Suggests: knitr, rmarkdown, testthat (>= 3.1.9), aws.s3, loggit,
config, shinyjs, shinyWidgets, bs4Dash, dplyr, DT, mongolite,
ggplot2

Imports: askpass
Suggests: curl, testthat (>= 2.1.0), digest, knitr, rmarkdown,
jsonlite, jose, sodium

Imports: grDevices, ggplot2 (>= 0.9.0), rJava, raster, sp

Depends: R (>= 2.10)
Imports: ape, geiger, knitcitations, paleotree, plyr, rotl, stringr,
taxize, treebase, usethis

Depends: R (>= 4.0)
Imports: checkmate, data.table, geodist, googlePolylines, curl, rjson,
purrr (>= 1.0.0), RcppSimdJson (>= 0.1.2), progressr, sf (>=
0.9.3), sfheaders
Suggests: covr, knitr, rmarkdown, testthat, terra, tibble

Depends: R (>= 3.1)
Imports: InterVA5 (>= 1.0.1), InSilicoVA (>= 1.1.3), InterVA4 (>=
1.7.3), Tariff (>= 1.0.1), ggplot2, crayon, cli, methods
Suggests: covr, nbc4va, testthat, R.rsp, knitr