Simplify your R data analysis and data visualization workflow by turning your data frame into an interactive 'Tableau'-like interface, leveraging the 'graphic-walker' JavaScript library and the 'htmlwidgets' package.

Generate Manhattan, Q-Q, and PCA plots from GWAS and PCA results using 'ggplot2'.

Identifying disease-associated significant SNPs using clustering approach. This package is implementation of method proposed in Xu et al (2019) <DOI:10.1038/s41598-019-50229-6>.

Exact Hardy-Weinburg testing (using Fisher's test) for SNP genotypes
  as typically obtained in a Genome Wide Association Study (GWAS).

Extract and reform data from GWAS (genome-wide association study) results, and then make a single integrated forest plot containing multiple windows of which each shows the result of individual SNPs (or other items of interest).

Performs variable selection with data from Genome-wide association studies (GWAS), or other high-dimensional data with continuous, binary or survival outcomes, combining in an iterative framework the computational efficiency of the structured screen-and-select variable selection strategy based on some association learning and the parsimonious uncertainty quantification provided by the use of non-local priors (see Sanyal et al., 2019 <DOI:10.1093/bioinformatics/bty472>).

When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.

'GWAS' R 'API' Data Download.
    This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by
    accessing the 'REST' 'API' <https://www.ebi.ac.uk/gwas/rest/docs/api/>.

Provides methods to Get Water Attributes Visually in R ('gwavr'). This allows the user to point and click on areas within the United States and get back hydrological data, e.g. flowlines, catchments, basin boundaries, comids, etc.