Depends: R (>= 3.3)
Imports: utils, stats, methods, graphics, grDevices, MASS, bigmemory
LinkingTo: Rcpp, RcppArmadillo, RcppEigen, RcppProgress, BH, bigmemory
Suggests: knitr, testthat, rmarkdown

Imports: dplyr (>= 1.0.1), ggplot2, lubridate, magrittr, pdp, purrr (>=
1.0.0), ranger, stringr, strucchange, tibble, viridis, tidyr,
cli

Imports: httr, dplyr, lubridate, stringr, purrr, tidyr

Imports: jsonlite, jsonvalidate, knitr, methods, ontologyIndex,
rmarkdown, R6, R6P, testthat, tools

Imports: plgp, stats, lhs, doParallel, foreach

Imports: igraph (>= 1.0), hot.deck, PoiClaClu, glmnet, methods, utils

Depends: R (>= 4.0)
Imports: AnnotationHub, AnnotationFilter, ensembldb, circlize, DESeq2,
SummarizedExperiment, vsn, ComplexHeatmap, matrixStats, grid,
ggpointdensity, ggrepel, gghighlight, ggplot2, ggsci, cowplot,
patchwork, purrr, dplyr, stringr, tidyr, tibble, RColorBrewer,
tidyselect, magrittr
Suggests: rmarkdown, knitr, recount3, apeglm

Suggests: here, httptest, knitr, rmarkdown, testthat

Suggests: devtools (>= 1.10.0), dplyr, ggplot2, ggrepel, knitr (>=
1.12.3), lifecycle (>= 1.0.3), pbapply, purrr, rlang,
rmarkdown, rnaturalearthdata (>= 0.1.0), rnaturalearthhires (>=
0.1.0), testthat (>= 0.9.1), tmap

Suggests: knitr (>= 1.12.3), testthat (>= 0.9.1)

Suggests: covr, httptest, testthat (>= 2.1.0), knitr, rmarkdown,
ggplot2

Depends: R (>= 2.10), maps
Imports: RColorBrewer, abind, fields, tgp, tcltk, graphics, sp

Imports: Rcpp (>= 0.11.0), progress (>= 1.1.2), stats

Imports: gaston, Matrix, RcppParallel, stats, graphics

Depends: R (>= 2.10.0), methods, RCurl, XML, stats

Suggests: testthat, knitr, rmarkdown, igraph

LinkingTo: Rcpp (>= 1.0.9), RcppEigen (>= 0.3.3.9.2), RcppProgress (>=
0.4.2)
Suggests: knitr (>= 1.40), rmarkdown (>= 2.16)

Suggests: spelling, rdflib, geiger (>= 2.0), phytools (>= 0.3.93),
knitr (>= 1.5), rfigshare (>= 0.3.0), knitcitations (>= 1.0.1),
testthat (>= 0.10.0), rmarkdown (>= 0.3.3), xslt, covr,
taxalight, progress

Imports: foreign, survey, rvest, xml2, methods, dplyr