Imports: Rcpp, reshape, reshape2, ggplot2, rlang

Imports: flexsurv, numDeriv, graphics, methods,

Imports: assertthat, igraph, Matrix, keras, tensorflow, reticulate,
MASS, ggraph, ggplot2, aggregation, usethis, magrittr, stats,
graphics

Depends: R (>= 3.5.0)
Imports: mlVAR, doParallel, parallel, foreach
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)

Imports: httr, jsonlite, utils, dplyr, tibble, stringi, Rcpp, janitor,
purrr
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, testthat, covr

Suggests: knitr, rmarkdown, testthat, nnet, magrittr, ggplot2, scales

Suggests: MASS, knitr, rmarkdown, semTools

Depends: R (>= 2.10), dplyr, tidyr, ggplot2

Depends: igraph, MASS, glmnet, mvtnorm, parallel, R (>= 2.10.1)
Imports: doParallel

Depends: R (>= 3.0), caret
Imports: knitr, kableExtra, ggplot2, XML, plyr, utils, yaml, mailR

Depends: R (>= 3.0),
Imports: graphics, stats, utils
Suggests: EMMREML, BGLR, MASS, doMPI, doRNG, compiler, foreach, sommer,
vcfR, jsonlite, rrBLUP, biomaRt, Matrix, doParallel,
RColorBrewer, optiSel, alstructure, NAM, gplots, phylogram,
cPCG
Enhances: miraculix (>= 0.9.10), RandomFieldsUtils (>= 0.5.9),
MoBPSmaps

Imports: plotrix, scales, dplyr, purrr, tidyr, pbapply, ggplot2, egg,
tibble, vctrs, rlang, geosphere

Depends: R (>= 4.0.0)
Imports: Rcpp, vegan, sads (>= 0.4.1), grDevices, utils, graphics,
stats, methods
LinkingTo: Rcpp
Suggests: rmarkdown, spatstat.geom, spatstat.random, testthat (>=
3.0.0), mockery, knitr

Depends: R (>= 2.0.0), cclust, clue, cluster, class

Depends: R (>= 4.1.0)
Imports: data.table, plyranges (>= 1.14.0), dplyr, GenomicRanges,
RaggedExperiment, MultiAssayExperiment, SummarizedExperiment,
stringr, ggbio, wCorr, magrittr, rlang, AnnotationDbi,
BiocGenerics, GenomeInfoDb, GenomicFeatures, IRanges,
S4Vectors, assertthat, ensembldb, ggplot2, ggrepel,
matrixStats, methods, qvalue, scales, tidyr, ggridges, pbapply,
BSgenome, tidyselect, lifecycle
Suggests: ArchR, RMariaDB, motifmatchr, BiocManager,
TxDb.Hsapiens.UCSC.hg38.refGene,
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,
BSgenome.Hsapiens.UCSC.hg19, withr, knitr, rmarkdown, chromVAR,
testthat (>= 3.0.0), uwot, irlba, glmmTMB, Matrix, waldo,
purrr, lmerTest, Biobase, lme4, zip, rtracklayer, cowplot,
mixtools, zoo