Suggests: knitr (>= 1.15.1), rmarkdown (>= 1.3), R.rsp (>= 0.40.0),
testthat (>= 1.0.2), BayesianTools

Depends: R (>= 3.0)
Imports: htmlwidgets (>= 0.3.2), purrr, rlang (>= 0.4.9), stringr,
vctrs
Suggests: knitr, ggplot2, rmarkdown, testthat (>= 3.0.0), devtools,
shiny, htmltools

Imports: igraph, infotheo, maftools, patchwork, pathwayTMB, stats,
survival, survminer, utils

Suggests: Rcpp, testthat (>= 3.0.0), withr

Suggests: graphics, tcltk, beepr, cli, crayon, pbmcapply, progress,
purrr, foreach, plyr, doFuture, future, future.apply, furrr,
RPushbullet, rstudioapi, shiny, commonmark, base64enc, tools

Suggests: testthat (>= 3.0.0), spelling, knitr, rmarkdown, sf

Depends: R (>= 3.0)
Imports: Rcpp, ggplot2, stats, graphics, vegan, deldir, geometry,
GeneralizedUmatrix, shiny, shinyjs, shinythemes, plotly,
grDevices
LinkingTo: Rcpp
Suggests: DataVisualizations, fastICA, tsne, FastKNN, MASS, pcaPP,
spdep, pracma, grid, mgcv, fields, png, reshape2, Rtsne,
methods, dendextend, umap, uwot, DatabionicSwarm, parallelDist,
parallel

Depends: R (>= 3.5.0)
Imports: stats, utils, incidence (>= 1.4.1), ggplot2, methods
Suggests: testthat, roxygen2, knitr, rmarkdown, outbreaks, magrittr,
distcrete, svglite, EpiEstim

Imports: lpSolveAPI, triangle, kappalab, igraph

Suggests: forcats, here (>= 0.1), testthat (>= 2.3.2)

Suggests: foreign, feather, reshape, plyr, formatR, qs, stringr,
ggplot2, lubridate, log4r (>= 0.1-5), DBI, RMySQL, RSQLite,
gdata, RODBC, RJDBC, readxl, xlsx, tuneR, pixmap, data.table,
RPostgreSQL, GetoptLong, whisker, testthat (>= 0.8)

Suggests: clipr, curl, dplyr, ggplot2, knitr, purrr, reprex, rmarkdown,
testthat, tidyr, yaml, htmltools, httr, covr

Depends: R (>= 3.6.0)
Imports: methods, utils, Rcpp, gtools, ggplot2, scales, rstantools (>=
2.0.0), loo (>= 2.0.0), lme4 (>= 1.1-28), mvtnorm, mgcv, gamm4,
abind, MASS, ordinal, nnet, mclogit
LinkingTo: Rcpp, RcppArmadillo
Suggests: ggrepel, rstanarm, brms, nlme, optimx, ucminf, parallel,
foreach, iterators, doRNG, unix, testthat, vdiffr, knitr,
rmarkdown, glmnet, cmdstanr, rlang, bayesplot (>= 1.5.0),
posterior, doParallel, future, future.callr, doFuture