Imports: Rcpp (>= 1.0.9), methods, stats, sparseinv, fields, Matrix(>=
1.5.1), parallel, GpGp, FNN
LinkingTo: Rcpp, RcppArmadillo, BH
Suggests: mvtnorm, knitr, rmarkdown, testthat

Depends: R (>= 3.2.2)
Imports: graphql (>= 1.3), magrittr, pryr, R6, jsonlite
Suggests: plumber, roxygen2 (>= 7.0.0), testthat

Imports: extraDistr, ggplot2, ggthemes, plyr, reshape2, stats

Imports: Matrix, sparseMatrixStats, fitdistrplus, RANN, spam

Imports: testthat, methods, callr, jsonlite

Depends: R (>= 4.0), ggplot2 (>= 3.4.0)
Imports: car, emmeans, Hmisc, lme4, lmerTest, magrittr, mgcv,
patchwork, purrr, stats, tidyr
Suggests: dplyr, knitr, Matrix (>= 1.6-5), rlang, rmarkdown, pbkrtest,
testthat (>= 3.0.0)

Depends: R (>= 3.5)
Imports: jsonlite, lime, quanteda, reticulate, utils, stats
Suggests: knitr, quanteda.textmodels, rmarkdown, testthat (>= 3.0.0),
withr

Depends: R (>= 4.2.0), methods, gRbase (>= 2.0.0)
Imports: igraph, stats4, broom, magrittr, Rcpp (>= 0.11.1)
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo, RcppEigen, gRbase
Suggests: microbenchmark, knitr, testthat (>= 2.1.0)

Imports: ggplot2, graphics, grDevices, igraph, methods, sf, sp, raster,
Rcpp (>= 0.12.11.4), utils
LinkingTo: Rcpp
Suggests: covr, cowplot, ggthemes, knitr, parallel, rmarkdown,
spelling, testthat

Imports: graphics, igraph, methods, tools, utils

Depends: R (>= 3.5.0)
Imports: stats, Matrix, rlang, ggplot2, grDevices, patchwork, RCurl,
plyr, parallel, reshape2, MASS, scales, cowplot, minpack.lm,
lfc, labeling, methods, utils, numDeriv
Suggests: knitr, rmarkdown, circlize, Seurat, ComplexHeatmap, ggrepel,
DESeq2, S4Vectors, data.table, clusterProfiler, biomaRt,
msigdbr, fgsea, rclipboard, cubature, DT, shinyjs, shinyjqui,
RColorBrewer, gsl, htmltools, matrixStats, monocle, VGAM,
quantreg, graphics, shiny, ggrastr, viridisLite, deSolve

Depends: R (>= 2.14.0),
Imports: dplyr, ggplot2 (>= 0.9.2), magrittr, RColorBrewer, tibble,
tidyr

Imports: tibble, magrittr, vctrs, dplyr, tidyr, rlang, stringr

Suggests: shinytest, testthat, datasets, grid

Imports: adegenet, ggplot2, stringr, igraph, stats, spatstat.geom,
spatstat.linnet, Matrix, vegan, utils, methods, pegas, MASS,
tidyr, sp, sf, hierfstat, rappdirs, gdistance, raster, foreign,
ecodist, Rdpack