Also abbreviates to "CCSeq". Finds clusters of colocalized sequences in .bed annotation files
    up to a specified cut-off distance. Two sequences are colocalized if they
    are within the cut-off distance of each other, and clusters are sets of
    sequences where each sequence is colocalized to at least one other sequence
    in the cluster. For a set of .bed annotation tables provided in a list 
    along with a cut-off distance, the program will output a file containing
    the locations of each cluster. Annotated .bed files are from 
    the 'pwmscan' application at <https://ccg.epfl.ch/pwmtools/pwmscan.php>. 
    Personal machines might crash or take excessively long depending 
    on the number of annotated sequences in each file and whether chromsearch() 
    or gensearch() is used.

Colocalisation analysis tests whether two traits share a causal
  genetic variant in a specified genomic region. Proportional testing for
  colocalisation has been previously proposed
  [Wallace (2013) <doi:10.1002/gepi.21765>], but is reimplemented here to
  overcome barriers to its adoption. Its use is complementary to the fine-
  mapping based colocalisation method in the 'coloc' package, and may be used in
  particular to identify false "H3" conclusions in 'coloc'.

Automate the co-localization analysis of fluorescence microscopy 
  images. Selecting regions of interest, extract pixel intensities from 
  the image channels and calculate different co-localization statistics. The
  methods implemented in this package are based on Dunn et al. (2011) 
  <doi:10.1152/ajpcell.00462.2010>.

Compare color palettes with simulations of color vision deficiencies - deuteranopia, protanopia, and tritanopia.
        It includes calculation of distances between colors, and creating summaries of differences between a color palette and simulations of color vision deficiencies.
        This work was inspired by the blog post at <http://www.vis4.net/blog/2018/02/automate-colorblind-checking/>.

Provide the safe color set for color blindness, 
         the simulator of protanopia, deuteranopia.
         The color sets are collected from:
         Wong, B. (2011) <doi:10.1038/nmeth.1618>, and
         <http://mkweb.bcgsc.ca/biovis2012/>.
         The simulations of the appearance of the colors to color-deficient
         viewers were based on algorithms in
         Vienot, F., Brettel, H. and Mollon, J.D. (1999) 
         <doi:10.1002/(SICI)1520-6378(199908)24:4%3C243::AID-COL5%3E3.0.CO;2-3>.
         The cvdPlot() function to generate 'ggplot' grobs of simulations 
         were modified from <https://github.com/clauswilke/colorblindr>.