We consider a set of sample counts obtained by sampling arbitrary fractions of a finite volume containing an homogeneously dispersed population of identical objects. This package implements a Bayesian derivation of the posterior probability distribution of the population size using a binomial likelihood and non-conjugate, discrete uniform priors under sampling with or without replacement. This can be used for a variety of statistical problems involving absolute quantification under uncertainty. See Comoglio et al. (2013) <doi:10.1371/journal.pone.0074388>.

Computes a new measure, DNSL betweenness, via the creation
    of a new graph from an existing one, duplicating nodes
    with self-loops. This betweenness centrality does not drop this
    essential information. Implements
    Merelo & Molinari (2024) <doi:10.1007/s42001-023-00245-4>.

Identifies code blocks that have a high level of similarity
  within a set of R files.

An easy-to-use yet powerful system for plotting grouped data effect sizes.
    Various types of effect size can be estimated, then plotted together with a
    representation of the original data. Select from many possible data representations
    (box plots, violin plots, raw data points etc.), and combine as desired.
    'Durga' plots are implemented in base R, so are compatible with base R methods
    for combining plots, such as 'layout()'. See Khan & McLean (2023) 
    <doi:10.1101/2023.02.06.526960>.

Functionality for analyzing dose-volume histograms (DVH)
        in radiation oncology: Read DVH text files, calculate DVH
        metrics as well as generalized equivalent uniform dose (gEUD),
        biologically effective dose (BED), equivalent dose in 2 Gy
        fractions (EQD2), normal tissue complication probability
        (NTCP), and tumor control probability (TCP). Show DVH
        diagrams, check and visualize quality assurance constraints
        for the DVH. Includes web-based graphical user interface.

Joint DNA-based disaster victim identification (DVI), as
    described in Vigeland and Egeland (2021)
    <doi:10.21203/rs.3.rs-296414/v1>. Identification is performed by
    optimising the joint likelihood of all victim samples and reference
    individuals. Individual identification probabilities, conditional on
    all available information, are derived from the joint solution in the
    form of posterior pairing probabilities. 'dvir' is part of the
    'pedsuite' collection of packages for pedigree analysis.