Last updated on 2024-05-02 23:51:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.9.7 | 86.76 | 796.38 | 883.14 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.9.7 | 78.64 | 551.27 | 629.91 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.9.7 | 1141.21 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.9.7 | 1149.59 | NOTE | |||
| r-devel-windows-x86_64 | 2.9.7 | 71.00 | 558.00 | 629.00 | NOTE | |
| r-patched-linux-x86_64 | 2.9.7 | 81.29 | 737.59 | 818.88 | NOTE | |
| r-release-linux-x86_64 | 2.9.7 | 75.35 | 739.93 | 815.28 | NOTE | |
| r-release-macos-arm64 | 2.9.7 | 237.00 | NOTE | |||
| r-release-macos-x86_64 | 2.9.7 | 473.00 | NOTE | |||
| r-release-windows-x86_64 | 2.9.7 | 74.00 | 583.00 | 657.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.9.7 | 250.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.9.7 | 569.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.9.7 | 99.00 | 651.00 | 750.00 | ERROR |
Version: 2.9.7
Check: Rd files
Result: NOTE
checkRd: (-1) gl.filter.maf.Rd:7: Lost braces; missing escapes or markup?
7 | {adegenet} object}
| ^
checkRd: (-1) gl.pcoa.Rd:68: Lost braces; missing escapes or markup?
68 | The function is essentially a wrapper for glPca {adegenet} or pcoa \{ape\}
| ^
checkRd: (-1) gl.play.history.Rd:17: Lost braces
17 | code{x2@other$history[c(1,4,5)]}). [optional].}
| ^
checkRd: (-1) utils.jackknife.Rd:49: Lost braces
49 | bold{Note} that when n is very small, jackknife resampling is not recommended.
| ^
checkRd: (-1) utils.jackknife.Rd:51: Lost braces
51 | Parallel computation is implemented. The argument code{n.cores} indicates the
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 2.9.7
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 2.9.7
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘snpStats’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 2.9.7
Check: examples
Result: ERROR
Running examples in 'dartR-Ex.R' failed
The error most likely occurred in:
> ### Name: gl.pcoa.plot
> ### Title: Bivariate or trivariate plot of the results of an ordination
> ### generated using gl.pcoa()
> ### Aliases: gl.pcoa.plot
>
> ### ** Examples
>
> test <- gl.pcoa(platypus.gl)
Starting gl.pcoa
Processing genlight object with SNP data
Warning: data include loci that are scored NA across all individuals.
Consider filtering using gl <- gl.filter.allna(gl)
Performing a PCA, individuals as entities, loci as attributes, SNP genotype as state
Flavor: r-oldrel-windows-x86_64