Last updated on 2025-07-28 21:50:12 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.11.0 | 5.35 | 87.30 | 92.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.11.0 | 3.78 | 60.60 | 64.38 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.11.0 | 148.50 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.11.0 | 144.35 | ERROR | |||
| r-devel-windows-x86_64 | 0.11.0 | 8.00 | 197.00 | 205.00 | ERROR | |
| r-patched-linux-x86_64 | 0.11.0 | 5.72 | 80.63 | 86.35 | OK | |
| r-release-linux-x86_64 | 0.11.0 | 5.17 | 80.59 | 85.76 | OK | |
| r-release-macos-arm64 | 0.11.0 | 79.00 | OK | |||
| r-release-macos-x86_64 | 0.11.0 | 139.00 | OK | |||
| r-release-windows-x86_64 | 0.11.0 | 9.00 | 173.00 | 182.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.11.0 | 79.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.11.0 | 168.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.11.0 | 9.00 | 216.00 | 225.00 | OK |
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘run-all.R’ [13s/32s]
Running ‘testthat.R’ [14s/32s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project3edec144093ebb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec1595ee230
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec1465c9677
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3edec1465c9677
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project3edec1465c9677
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec16bd6b0e6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project3edec1236bd901
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project3edec1236bd901
Clearing cache for project: test_project3edec1149c6f8c
Objects to clear from memory: xxx
Project name: test_project3edec1149c6f8c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project3edec140f9772a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec140f9772a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3edec176f6d3b3
Project name: test_project3edec13ca6d6aa
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec1511b5bde
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project3edec1303368f5 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project3edec1303368f5 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project23edec17d6fedc7 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file3edec134aa98ef helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project3edec168cf5c9a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project3edec168cf5c9a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project3edec168cf5c9a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project3edec168cf5c9a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project3edec168cf5c9a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project3edec168cf5c9a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project3edec168cf5c9a is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project3edec13497908b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project3edec12c6202cd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project3edec11f6cf8f2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec11f6cf8f2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec163f90ed3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec163f90ed3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec14854cb7d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec14854cb7d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec159be62bb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec1236bfcb7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec1236bfcb7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec144f8c4f1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec144f8c4f1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec13baabd68
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec13baabd68
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec15e573bf7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec15e573bf7
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project3edec1764226b9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec1764226b9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project3edec11649be6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project3edec15e0b05f5
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec11847fea8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3edec140ca9625
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project3f70d4127ebbbe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d457f40970
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d410f7798c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3f70d410f7798c
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project3f70d410f7798c
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d47ad47d79
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project3f70d472d9a7f3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project3f70d472d9a7f3
Clearing cache for project: test_project3f70d4356388a7
Objects to clear from memory: xxx
Project name: test_project3f70d4356388a7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project3f70d43dbe9384
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d43dbe9384
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project3f70d46347222b
Project name: test_project3f70d451037b24
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d429a8f722
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project3f70d42ccbfeea is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project3f70d42ccbfeea is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project23f70d45a6de6fc is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file3f70d41190c3e5 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project3f70d43653b4c0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project3f70d43653b4c0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project3f70d43653b4c0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project3f70d43653b4c0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project3f70d43653b4c0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project3f70d43653b4c0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project3f70d43653b4c0 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project3f70d43db12c8a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project3f70d49e3f3df
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project3f70d42d54a99e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d42d54a99e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d45aa5a0e8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d45aa5a0e8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d45a675990
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d45a675990
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d47670ffdb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d46c75e0c7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d46c75e0c7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d47b0f42d7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d47b0f42d7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d42d45071f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d42d45071f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d4794cfc36
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d4794cfc36
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project3f70d4375b4a73
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d4375b4a73
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project3f70d46b7916d9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project3f70d45ef75b09
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d46ff6f9fe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project3f70d411aa8039
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘run-all.R’ [33s/84s]
Running ‘testthat.R’ [33s/79s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project27194b44b3c7fc
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b65c777ba
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b2814a800
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project27194b2814a800
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project27194b2814a800
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b25eb9cfd
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project27194b4233bd7f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project27194b4233bd7f
Clearing cache for project: test_project27194b7f7e2cd8
Objects to clear from memory: xxx
Project name: test_project27194b7f7e2cd8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project27194bf45ef3c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194bf45ef3c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project27194b1a9d194c
Project name: test_project27194b36c3438e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b666651ce
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project27194bca3a0f2 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project27194bca3a0f2 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project227194b6f055448 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file27194b753d4019 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project27194b799d6a5f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project27194b799d6a5f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project27194b799d6a5f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project27194b799d6a5f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project27194b799d6a5f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project27194b799d6a5f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project27194b799d6a5f is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project27194b727c1c8e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project27194b556b93b6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project27194b40a1c1e5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b40a1c1e5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b47fc9e52
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b47fc9e52
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b76a990cc
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b76a990cc
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b147b04ef
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b5eb78d7a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b5eb78d7a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b2185f73c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b2185f73c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b37ebb73b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b37ebb73b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b2f2db5e4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b2f2db5e4
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project27194b925ea7f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b925ea7f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project27194b1bc73d76
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project27194b139a9cfe
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b17df8f9e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project27194b6c1908a6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project2736ed4e454997
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed64c11fe
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed4e152b3e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project2736ed4e152b3e
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project2736ed4e152b3e
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed419b0426
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project2736ed1b986948
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project2736ed1b986948
Clearing cache for project: test_project2736ed53cbfee5
Objects to clear from memory: xxx
Project name: test_project2736ed53cbfee5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project2736ed31830917
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed31830917
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project2736ed2fe9dc8a
Project name: test_project2736ed76e57fa0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed7759b1b9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project2736ed5d59ceda is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2736ed5d59ceda is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project22736ed5b8d86b2 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file2736ed78a6acdc helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project2736ed2ab1045 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project2736ed2ab1045 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project2736ed2ab1045 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project2736ed2ab1045 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project2736ed2ab1045 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project2736ed2ab1045 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project2736ed2ab1045 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project2736ed6a655c86
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project2736ed5d6b27d1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project2736ed4c156c07
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed4c156c07
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed731cebcf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed731cebcf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed218ed97b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed218ed97b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed299745f1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed57ee5ec4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed57ee5ec4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed72c02da4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed72c02da4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed535a2419
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed535a2419
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed3a6a7a04
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed3a6a7a04
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project2736ed34bec401
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed34bec401
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project2736ed59b8aec6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project2736ed488294ee
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed120bdab5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2736ed60c4c7f0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.11.0
Check: tests
Result: ERROR
Running ‘run-all.R’ [33s/92s]
Running ‘testthat.R’ [32s/80s]
Running the tests in ‘tests/run-all.R’ failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project28851035373f0d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project288510e0ad687
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2885102350f961
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project2885102350f961
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project2885102350f961
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project288510b7125a4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project288510444d355a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project288510444d355a
Clearing cache for project: test_project2885103d604f4b
Objects to clear from memory: xxx
Project name: test_project2885103d604f4b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project28851028b3c4ad
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28851028b3c4ad
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project28851068069f3e
Project name: test_project28851022388832
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2885101df5635e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project28851047fcb0a9 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project28851047fcb0a9 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project22885101ff01921 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file28851014af8cd9 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project288510525c8d06 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project288510525c8d06 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project288510525c8d06 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project288510525c8d06 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project288510525c8d06 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project288510525c8d06 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project288510525c8d06 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project2885105a2987b7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project28851074dd3aaf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project2885105c411343
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2885105c411343
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2885102b5c285e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2885102b5c285e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project28851050fd311b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28851050fd311b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project28851064bf2243
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2885103bb68a7b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2885103bb68a7b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project28851046cb55d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28851046cb55d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project2885101de8343f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2885101de8343f
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project28851031267914
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28851031267914
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project28851040f1d111
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project28851040f1d111
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project28851023f56b55
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project2885107af15e45
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2885103c79545c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project2885104ab876a5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project289e3148b0789e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project289e314e944d25
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project289e3174340a7a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project289e3174340a7a
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project289e3174340a7a
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project289e3175beac74
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project289e315e3349d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project289e315e3349d
Clearing cache for project: test_project289e31236517b1
Objects to clear from memory: xxx
Project name: test_project289e31236517b1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project289e317fe34167
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e317fe34167
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project289e3179d61822
Project name: test_project289e312b1d59c1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e316741bfb4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Current Directory: test_project289e316537cbc6 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project289e316537cbc6 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2289e31291096c3 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file289e316443228d helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project289e3177b18db5 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project289e3177b18db5 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project289e3177b18db5 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project289e3177b18db5 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project289e3177b18db5 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project289e3177b18db5 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project289e3177b18db5 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project289e3150d0cd38
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project289e315176cf34
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project289e3171a10c84
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e3171a10c84
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project289e316cbf6bf7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e316cbf6bf7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project289e313f3ae51a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e313f3ae51a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project289e315a067f0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project289e311d825fa0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e311d825fa0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project289e313e0337ba
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e313e0337ba
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project289e3145b50c16
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e3145b50c16
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project289e3130b6ea6a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e3130b6ea6a
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project289e3144cfa0ce
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e3144cfa0ce
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project289e314a1766ba
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project289e3133cba8bd
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e314f1ca208
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project289e31674ecf0d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.11.0
Check: tests
Result: ERROR
Running 'run-all.R' [55s]
Running 'testthat.R' [54s]
Running the tests in 'tests/run-all.R' failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project56c072983eb5
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project56c01ff12ff8
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project56c06ed84ed0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project56c06ed84ed0
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project56c06ed84ed0
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project56c0564d653a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project56c0477e78a2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project56c0477e78a2
Clearing cache for project: test_project56c03ff17d5a
Objects to clear from memory: xxx
Project name: test_project56c03ff17d5a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project56c072663e5e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c072663e5e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project56c02540d1b
Project name: test_project56c036485a6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c062b86c6a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_project56c09cd4a2f is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project56c09cd4a2f is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project256c04a4c6d7f is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file56c02ac619f0 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project56c03b5b987 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project56c03b5b987 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project56c03b5b987 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project56c03b5b987 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project56c03b5b987 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project56c03b5b987 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project56c03b5b987 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project56c019d8642c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project56c0410450e1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project56c090dc53
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c090dc53
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project56c03c4666d2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c03c4666d2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project56c03bca4e1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c03bca4e1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project56c03bdf20c6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project56c014a3488e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c014a3488e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project56c04f697a23
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c04f697a23
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project56c0b761086
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c0b761086
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project56c07a3c3840
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c07a3c3840
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project56c02fb72cb0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c02fb72cb0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project56c0122b6409
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project56c019914a8b
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c09a54d27
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project56c04c0e5ddf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project978c68257dc2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project978c13122cac
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project978c1d6c6376
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project978c1d6c6376
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project978c1d6c6376
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project978c57361e90
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project978c4b862e79
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project978c4b862e79
Clearing cache for project: test_project978c6300ad3
Objects to clear from memory: xxx
Project name: test_project978c6300ad3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project978c75307e37
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c75307e37
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project978c37eb7d71
Project name: test_project978c4e552e74
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c575210af
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_project978c19344ab is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project978c19344ab is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2978c6b141791 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file978c21c825c9 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project978c3da77c6e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project978c3da77c6e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project978c3da77c6e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project978c3da77c6e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project978c3da77c6e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project978c3da77c6e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project978c3da77c6e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project978c1f56629b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project978c51137cbb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project978c2d111829
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c2d111829
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project978c39105cc6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c39105cc6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project978c78cd4627
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c78cd4627
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project978c625c5b41
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project978c51b16b4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c51b16b4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project978c3c4120d3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c3c4120d3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project978c38b63261
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c38b63261
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project978c2f93995
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c2f93995
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project978cf263f1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978cf263f1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project978c9082aa2
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project978c650225c9
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c50427dbf
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project978c12d6205e
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.11.0
Check: tests
Result: ERROR
Running 'run-all.R' [53s]
Running 'testthat.R' [53s]
Running the tests in 'tests/run-all.R' failed.
Complete output:
> library(testthat)
>
> test_check("ProjectTemplate")
Loading required package: ProjectTemplate
Loading required package: digest
Loading required package: tibble
Project name: test_project187b8ad9729c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project187b8a7b19ac
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project187b82f6c4cf7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project187b82f6c4cf7
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project187b82f6c4cf7
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project187b81ee2015
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project187b858ace74
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project187b858ace74
Clearing cache for project: test_project187b833416f77
Objects to clear from memory: xxx
Project name: test_project187b833416f77
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project187b86793170b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b86793170b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project187b8633d6838
Project name: test_project187b87c072760
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b83d04752
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_project187b83382a09 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project187b83382a09 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project2187b87d573005 is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file187b817f2d9e helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project187b819784c39 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project187b819784c39 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project187b819784c39 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project187b819784c39 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project187b819784c39 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project187b819784c39 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project187b819784c39 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project187b8239340c0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project187b83cba6c14
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project187b8c0431b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b8c0431b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project187b86a9c515b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b86a9c515b
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project187b83b023999
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b83b023999
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project187b8264e763d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project187b8448b5e2d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b8448b5e2d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project187b86e565572
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b86e565572
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project187b86e8c1e88
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b86e8c1e88
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project187b870a21f7a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b870a21f7a
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project187b8d206bd6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b8d206bd6
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project187b85f476592
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project187b8134c161a
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b848f32f5c
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project187b86af476a1
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(ProjectTemplate)
Loading required package: digest
Loading required package: tibble
>
> test_check("ProjectTemplate")
Project name: test_project14c78427b46fb
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project14c7833211f1d
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project14c78395d79
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project14c78395d79
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
dummy 999
Configuration for project: test_project14c78395d79
version 0.11.0
data_loading TRUE
data_loading_header TRUE
data_ignore
cache_loading TRUE
recursive_loading FALSE
munging TRUE
logging FALSE
logging_level INFO
load_libraries FALSE
libraries reshape2, plyr, tidyverse, stringr, lubridate
as_factors FALSE
tables_type tibble
attach_internal_libraries FALSE
cache_loaded_data TRUE
sticky_variables NONE
underscore_variables TRUE
cache_file_format RData
Additional custom config present for this project:
Objects to clear from memory: config helper.function project.info
Project name: test_project14c784f1256d4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: foo.reader.R
Running helper script: helpers.R
Autoloading data
Loading data set: example
Creating cache entry from global environment: example
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Following objects not in memory:
Objects to clear from memory: xxxx
Project name: test_project14c7849771602
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: helper.function project.info
Clearing cache for project: test_project14c7849771602
Clearing cache for project: test_project14c7857354c41
Objects to clear from memory: xxx
Project name: test_project14c7857354c41
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Creating cache entry from CODE: xxxx
Objects to clear from memory: config project.info
Objects to clear from memory: project.info
Objects to clear from memory: yyy
Following objects not in memory: xxx
Following objects not in memory: xxx
Variables not cleared: config
No objects to clear
Objects to clear from memory: .yyy helper.function project.info
Project name: test_project14c7837ce1c75
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c7837ce1c75
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Configuration for project: test_project14c781bf86aed
Project name: test_project14c7850ea7cc7
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c78d277ae0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
== Testing 1.R =================================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done!
Directory: test_project14c785068770b is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project14c785068770b is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Directory: test_project214c781cc57ce is a ProjectTemplate directory
Cannot create a new project inside an existing one
Please change to another directory and re-run create.project()
Objects to clear from memory: config helper.function project.info
No objects to clear
Objects to clear from memory: config file14c78139339e5 helper.function project.info
Creating cache entry from CODE: test_data
Current Directory: test_project14c78fd75b8 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run load.project()
Current Directory: test_project14c78fd75b8 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run clear.cache() again.
Current Directory: test_project14c78fd75b8 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run cache() again.
Current Directory: test_project14c78fd75b8 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run reload.project() again.
Current Directory: test_project14c78fd75b8 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run test.project() again.
Current Directory: test_project14c78fd75b8 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Change to a valid ProjectTemplate directory and run stub.tests() again.
Current Directory: test_project14c78fd75b8 is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate.
Please change to correct directory and re-run project.config()
Project name: test_project14c7839ca3bd3
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: Thumbs
Loading required namespace: RSQLite
Creating cache entry from global environment: var_to_cache
Loading required package: data.table
01-test_data.py start
01-test_data.py finish
02-test_data.py start
['1', '20']
['2', '30']
['3', '40']
Python data exists in the environment
y
02-test_data.py finish
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format
There is a new config item called cache_loaded_data which auto-caches data
after it has been loaded from the data directory. This has been switched
off for this project in case it breaks your scripts. However you can switch
it on manually by editing global.dcf
data_tables has been renamed tables_type. It can take the value 'tibble',
'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be
set to 'data_table', otherwise the default 'data_frame' will be used. if you
wish a different default set it manually by editing global.dcf. Future new
projects will use 'tibble' by default.
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file contained unused entries which have been
removed. The unused entries are:
Migrating project configuration
[1] FALSE
Migrating project configuration
[1] TRUE
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
tables_type
Project name: test_project14c785b6b5771
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: .Random.seed config helper.function project.info
Project name: test_project14c78183fe08
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c78183fe08
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project14c7818662177
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c7818662177
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project14c785b562f19
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c785b562f19
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project14c7839975199
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project14c786b405866
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c786b405866
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project14c78693551c9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c78693551c9
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Project name: test_project14c78669423fa
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c78669423fa
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Objects to clear from memory: config helper.function project.info
Project name: test_project14c785f235f9a
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c785f235f9a
Loading project configuration
Objects to clear from memory: config helper.function project.info
Project name: test_project14c781b606fed
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c781b606fed
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info
Loading required package: qs
qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103
Creating cache entry from global environment: cache.qs
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Creating cache entry from global environment: xxxx
Migrating project configuration
[1] FALSE
Your existing project configuration in globals.dcf does not contain up to
date configuration settings in this version 0.11.0 of ProjectTemplate. They will
be added automatically during migration, but you should review afterward.
Your config.dcf file was missing entries and defaults
have been used. The missing entries are:
cache_loaded_data
Loading table: example_30a
Loading table: example_30b
Loading table: example_31a
Loading table: example_31b
Loading table: example_28
re-encoding from CP1252
re-encoding from CP1252
Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22
Objects to clear from memory: config helper.function project.info
Items in cache will not be cleared
Use reload.project(reset=TRUE) to clear cache also
Objects to clear from memory: helper.function project.info z
Reloading Project ...
Project name: test_project14c784beb0
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading cached data set: z
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Objects to clear from memory: config helper.function project.info x y z
Project name: test_project14c781c441ad0
Loading project configuration
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c786c55350
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
Project name: test_project14c7860dc47a4
Loading project configuration
Autoloading helper functions
Running helper script: globals.R
Running helper script: helpers.R
Autoloading data
Loading data set: file_not_in_full_template
Translating data.frame to tibble: file_not_in_full_template
Creating cache entry from global environment: file_not_in_full_template
Munging data
Running preprocessing script: 01-A.R
Sourcing R script: 01-A.R
[1] FALSE
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ──
`ppm.reader(data.file, filename, variable.name)` did not throw the expected warning.
[ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64