Last updated on 2026-02-03 17:49:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.7 | 18.01 | 278.63 | 296.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.7 | 11.07 | 203.33 | 214.40 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.3.7 | 31.00 | 222.79 | 253.79 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.3.7 | 31.00 | 222.84 | 253.84 | ERROR | |
| r-devel-windows-x86_64 | 1.3.7 | 18.00 | 228.00 | 246.00 | OK | |
| r-patched-linux-x86_64 | 1.3.7 | 14.47 | 263.82 | 278.29 | OK | |
| r-release-linux-x86_64 | 1.3.7 | 17.24 | 263.03 | 280.27 | OK | |
| r-release-macos-arm64 | 1.3.7 | OK | ||||
| r-release-macos-x86_64 | 1.3.7 | 10.00 | 217.00 | 227.00 | OK | |
| r-release-windows-x86_64 | 1.3.7 | 18.00 | 225.00 | 243.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.7 | OK | ||||
| r-oldrel-macos-x86_64 | 1.3.7 | 11.00 | 137.00 | 148.00 | OK | |
| r-oldrel-windows-x86_64 | 1.3.7 | 25.00 | 309.00 | 334.00 | OK |
Version: 1.3.7
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘ranger’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.3.7
Check: examples
Result: ERROR
Running examples in ‘MSiP-Ex.R’ failed
The error most likely occurred in:
> ### Name: Weighted.matrixModel
> ### Title: Weighted.matrixModel
> ### Aliases: Weighted.matrixModel
>
> ### ** Examples
>
> data(SampleDatInput)
> datScoring <- Weighted.matrixModel(SampleDatInput)
Error:
! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `across()` instead.
Backtrace:
▆
1. ├─MSiP::Weighted.matrixModel(SampleDatInput)
2. │ └─... %>% dplyr::select(-1)
3. ├─dplyr::select(., -1)
4. ├─base (local) set_rownames(., .$Experiment.id)
5. │ └─base::is.data.frame(x)
6. ├─base::as.data.frame(.)
7. └─dplyr::summarise_each(., funs(max(.)))
8. └─dplyr:::each_defunct("summarise_each()")
9. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()")
10. └─lifecycle:::deprecate_stop0(msg)
11. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.3.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘MSiP_tutorial.Rmd’ using knitr
Quitting from MSiP_tutorial.Rmd:45-49 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `across()` instead.
---
Backtrace:
▆
1. ├─MSiP::diceCoefficient(SampleDatInput)
2. │ ├─base::suppressWarnings(...)
3. │ │ └─base::withCallingHandlers(...)
4. │ └─... %>% dplyr::select(-1)
5. ├─dplyr::select(., -1)
6. └─dplyr::summarise_each(., funs(max(.)))
7. └─dplyr:::each_defunct("summarise_each()")
8. └─lifecycle::deprecate_stop(when = "0.7.0", what = fun, with = "across()")
9. └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MSiP_tutorial.Rmd' failed with diagnostics:
`summarise_each()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `across()` instead.
--- failed re-building ‘MSiP_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘MSiP_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc