8177bd0dfe49d81affb76f6b600e9495 *DESCRIPTION
eca17acb99a23122e72e34f5a359fec0 *NAMESPACE
e5dd3240adffe75a097856da47d5e66e *NEWS
9bd9634908131d18affe0b36372be085 *R/adjustIndels.R
bc7e8cfa237c581700aa79c6bcfb54fe *R/alignReadToRef.R
ca9d3a0d66b61e609be2965d86e0ba2e *R/alignSoftClippedRead.R
61c4210025f85b461ccc0ba96d7442d1 *R/annoPathogMutToCds.R
d0fd0095d24053e51ab3d41ca2f49fbd *R/callSingleRead.R
e63e673708a5a21e70fe76a398965732 *R/cdsToGenome.R
19b78b58c65fe07c82bb8a3d45793838 *R/checkExonicSNV.R
83ca4db0a03f861bf54dcd4d74f453a9 *R/checkSpliceAcceptorSNV.R
1c42817a4de766de5cd2376091b2b471 *R/checkSpliceDonorSNV.R
ef7d66b73985ee7d2181e91e02f63c56 *R/checkStartCodonSNV.R
39bcf715fa2230e4854cde9f7dfb1b82 *R/checkStopCodonSNV.R
32a71a628ec9a9cead45468d51ee9145 *R/decodeCIGAR.R
47d89c407fbbb9f921d0ce56dea44960 *R/encodeCIGAR.R
3c09669d18f9b63675f8466b76dfb70c *R/extractDetectionWindow.R
ade46f356de51749ba444e5381a08c4c *R/gapShiftingPairwiseAlignment.R
ac98c7166fd89fb11646583d23982893 *R/genomeToCds.R
49cbc40fae5f980383798d28dda0cc79 *R/getCdsAndNoncds.R
39a58fc013b5a3779df084fde064b0ed *R/getGeneInfo.R
065d612e18a204b2f3c59c5815172634 *R/getMutationsDistance.R
b629a4f917bf1394c78e297f9e527b87 *R/getReversions.R
39f61d92d3b3943211809e027e2eb8e6 *R/leftAlignIndel.R
7d574977998bacda6991cee504c310ac *R/parseCIGAR.R
4e32e775d1273c06a859bd38c360bee5 *R/parseHGVS.R
5273283c0777398c9b8cc731d5af8327 *R/processPathogMut.R
b63ad344117ba0edd7dc33715b9200af *R/realignSingleRead.R
c33e91c20491768c903ad82b5edd089a *R/scanAlnForRev.R
45c04640f2fe98166b67f7c00f903846 *R/trimCIGAR.R
e26919ab08f56f2666f3c3ce4648834d *build/vignette.rds
c36956557a0121e971c74fec7c5dff0c *inst/doc/help.R
5641356e629d8de1afd41a0c677fad95 *inst/doc/help.Rmd
05b7dfda439acc075e1b5a1d5a845b98 *inst/doc/help.html
6a1fa1d1b664669b17fe5c8d5be8d10e *inst/extdata/toy_data_1.bam
b933cbb155b337352e65a3c5b0a9be50 *inst/extdata/toy_data_1.bam.bai
5b916cbf7d96f231697bfe2c7267f4d0 *inst/extdata/toy_data_2.bam
e03f3b2692180d3bb4d2cb8d49aed9d8 *inst/extdata/toy_data_2.bam.bai
bda1534855347c02e4ee8a0c19f25a23 *inst/extdata/toy_data_3.bam
51c761d43b8b3283f71fe7196f648da8 *inst/extdata/toy_data_3.bam.bai
c554ad68e67ef5e0f1dfbc16df36faae *inst/extdata/toy_data_4.bam
950b08a7d284fe52cad684de88bc3d7b *inst/extdata/toy_data_4.bam.bai
db7f676167ba7205f840ed4ee2456833 *inst/extdata/toy_data_5.bam
8d49ef72bc9e2d8f332ee3e81953a6e7 *inst/extdata/toy_data_5.bam.bai
954d07d434d3205a29629d882de9aa1a *inst/extdata/toy_data_6.bam
c713b9aac4d5c1e89f5f67f0ac46c912 *inst/extdata/toy_data_6.bam.bai
ae5c811c9a0d555810d12c5551d88bd8 *inst/extdata/toy_data_6_reference.fa
0d8fffafd3ec4d4642123bcf0d7ec5a7 *man/getReversions.Rd
5641356e629d8de1afd41a0c677fad95 *vignettes/help.Rmd
