Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm

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Documentation for package ‘InSilicoVA’ version 1.4.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

causetext	Translation list of COD codes
condprob	Conditional probability table used by InterVA-4
condprobnum	Conditional probability values used by InterVA-4
csmf.diag	Convergence test for fitted InSilico model
extract.prob	Obtain conditional probabilities from training data
get.indiv	Get individual COD probabilities from InSilicoVA Model Fits
indivplot	plot aggregated COD distribution
insilico	Implement InSilicoVA methods
insilico.fit	Implement InSilicoVA methods with more flexible customization
insilico.train	Modified InSilicoVA methods with training data
mapICD	Map ICD-10 codes into the WHO 2016 cause list
physician_debias	Implement physician debias algorithm
plot.insilico	plot CSMF from a "insilico" object
print.insilico	Print method for summarizing InSilicoVA Model Fits
print.insilico_summary	Print method for summarizing InSilicoVA Model Fits
probbase	Conditional probability of InterVA4
probbase3	Conditional probability of InterVA4.03
RandomPhysician	100 records of Sample Input together with two simulated physician codes
RandomVA1	1000 records of Sample Input
RandomVA2	100 records of Sample Input
SampleCategory	Correspondence between InterVA causes and the physician coded cause categories
SamplePhysician	100 records of Sample debiased physician codes
stackplot	plot grouped CSMF from a "insilico" object
summary.insilico	Summarizing InSilicoVA Model Fits
updateIndiv	Update individual COD probabilities from InSilicoVA Model Fits