Estimating Plant Pathogen Epidemiology Parameters from Laboratory Assays


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Documentation for package ‘EpiPvr’ version 0.0.1

Help Pages

AP_assay_simulator Main function for AP assay simulation
ap_data_sim_PT Simulated access period experiment Data for a hypothetical PT virus
ap_data_sim_SPT Simulated access period experiment Data for a hypothetical SPT virus
calculate_epidemic_probability Main function for calculating epidemic probability
estimate_virus_parameters_PT Estimate PT virus parameters using Bayesian inference with rstan
estimate_virus_parameters_SPT Estimate SPT virus parameters using Bayesian inference with rstan